Gene Information

Name : XOO1188 (XOO1188)
Accession : YP_199827.1
Strain : Xanthomonas oryzae KACC10331
Genome accession: NC_006834
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1216387 - 1217136 bp
Length : 750 bp
Strand : +
Note : -

DNA sequence : 
ATGTGCGGGCGCAGCTTGCCAAGCAGTGAGCAGACTTCCAGACTGCACTGCATGCGCATTCTGCTGGTTGAAGACGATCT
TTCACTGGGCGAAGGCATCCGCACCGCGCTGCGGCGCGCCGCCTATGCGGTGGACTGGGTGCATGACGGCGTCAGTGCGT
TGATGGCGCTACAGGAGCAGACCATGGATCTGGTCATCCTGGATTTGGGGTTGCCGCGCATGGATGGCATCGGGGTCATT
CGCACCGCACGCGCACGTGCGGTGGACACGCCGATTCTGGTACTCAGCGCACGCGAACGTGCAGCCGACCGCGCGCTTGG
CCTGGATGTCGGTGCAGACGATTATCTGGGCAAGCCGTTCGACACCAATGAACTGTTGGCCCGCACGAGGGCCTTGCTGC
GGCGCTCGGCCGGGCGCACGCAGCCTGCATTGCAGGCCGGCGCATTGCGGCTGGATCCGGCTGGCATGTCGGTGCGCTGG
CATGGCCGCGATCTGGATCTGACCCGTCGCGAATTCGCCCTGTTGTGGCTGCTGATGGAGCAGCGTGGACGACCGATCGG
TCGCGAACGCATCCAGCAGCATCTCTATGGATGGGACGAAGACGTCGCCAGCAATGCGGTGGACGTGCATGTGCACCAGC
TGCGTCGCAAGCTGTCGGCAGCCGTGATCCGCACCATTCGCGGTATTGGCTATGCACTGGACGAACAGGCCGCACAGGCC
GCCGCGGCCCCGCCGCAGGCACCGCAATGA

Protein sequence : 
MCGRSLPSSEQTSRLHCMRILLVEDDLSLGEGIRTALRRAAYAVDWVHDGVSALMALQEQTMDLVILDLGLPRMDGIGVI
RTARARAVDTPILVLSARERAADRALGLDVGADDYLGKPFDTNELLARTRALLRRSAGRTQPALQAGALRLDPAGMSVRW
HGRDLDLTRREFALLWLLMEQRGRPIGRERIQQHLYGWDEDVASNAVDVHVHQLRRKLSAAVIRTIRGIGYALDEQAAQA
AAAPPQAPQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 2e-31 44
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-25 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XOO1188 YP_199827.1 response regulator BAC0197 Protein 8e-29 43
XOO1188 YP_199827.1 response regulator BAC0487 Protein 7e-29 43
XOO1188 YP_199827.1 response regulator NC_002516.2.879194.p Protein 3e-23 41
XOO1188 YP_199827.1 response regulator U82965.2.orf14.gene. Protein 1e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XOO1188 YP_199827.1 response regulator VFG1390 Protein 2e-30 43
XOO1188 YP_199827.1 response regulator VFG0473 Protein 7e-33 43
XOO1188 YP_199827.1 response regulator VFG0596 Protein 2e-25 42