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Name : LBA0078 (LBA0078) Accession : YP_193011.1 Strain : Lactobacillus acidophilus NCFM Genome accession: NC_006814 Putative virulence/resistance : Virulence Product : response regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG0745 EC number : - Position : 79913 - 80629 bp Length : 717 bp Strand : + Note : VicR; COG0745 Response regulators conserved isting of a CheY-like receiver domain and a winged-helix DNA-binding domain DNA sequence : ATGCCAAAAAAAATTCTCGTCGTCGACGATGAAAAGCCTATTTCCGATATTATCAAATTTAATTTAACTAAGGAAGGCTT TGACGTCGACACTGCCTATGATGGCGAAGAAGCTGTTAAAAAAGTTGACGAATACGACCCAGATCTAATGATCTTGGATT TAATGTTGCCAAAAAAGGATGGACTAGAGGTTGCTCGTGAAGTCCGTCAAACGCATGATATGCCAATTATTATGGTAACT GCAAAAGATACTGAAATCGATAAAGTTTTAGGACTCGAAATGGGTGCGGATGATTACGTAACTAAACCATTTTCTAACCG TGAATTAGTTGCTCGGGTTAAGGCTAACTTACGTCGCCGCGATATTGTTAAAAAAGCAGAAGCTGCAAATCAAGAAGAAC CCGATAAGAATATTAAGATCGGTAATTTGGTTATCATGCCTGATGCCTATATTGTAGAAAAGAATGGTAAGAAGATTGAA CTTACACATCGTGAATTTGAACTTCTTTACTATTTAGCTCAACATATGGGCCAAGTTATGACACGTGAACATTTATTACA AACTGTTTGGGGTTATGACTACTTTGGTGATGTACGTACTGTTGATGTAACTGTTCACCGTTTGAGAGAAAAGATTGAGG ATAACCCAATTCAACCTCAAATTTTGGTTACTCGTCGTGGTGTCGGCTACTATGTAAAACAGCCAAGTGAAGGATAA Protein sequence : MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLEVAREVRQTHDMPIIMVT AKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDIVKKAEAANQEEPDKNIKIGNLVIMPDAYIVEKNGKKIE LTHREFELLYYLAQHMGQVMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYVKQPSEG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD42044.1 | hypothetical protein | Not tested | PAI II 536 | Protein | 6e-32 | 42 |
| c3565 | NP_755440.1 | response regulator | Not tested | PAI I CFT073 | Protein | 6e-32 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LBA0078 | YP_193011.1 | response regulator | NC_012469.1.7685629. | Protein | 6e-66 | 65 |
| LBA0078 | YP_193011.1 | response regulator | NC_003923.1003749.p0 | Protein | 3e-50 | 54 |
| LBA0078 | YP_193011.1 | response regulator | NC_002952.2859905.p0 | Protein | 3e-50 | 53 |
| LBA0078 | YP_193011.1 | response regulator | NC_009782.5559369.p0 | Protein | 4e-50 | 53 |
| LBA0078 | YP_193011.1 | response regulator | NC_002951.3237708.p0 | Protein | 4e-50 | 53 |
| LBA0078 | YP_193011.1 | response regulator | NC_002758.1121668.p0 | Protein | 4e-50 | 53 |
| LBA0078 | YP_193011.1 | response regulator | NC_007622.3794472.p0 | Protein | 3e-50 | 53 |
| LBA0078 | YP_193011.1 | response regulator | NC_009641.5332272.p0 | Protein | 4e-50 | 53 |
| LBA0078 | YP_193011.1 | response regulator | NC_013450.8614421.p0 | Protein | 4e-50 | 53 |
| LBA0078 | YP_193011.1 | response regulator | NC_007793.3914279.p0 | Protein | 4e-50 | 53 |
| LBA0078 | YP_193011.1 | response regulator | NC_002745.1124361.p0 | Protein | 4e-50 | 53 |
| LBA0078 | YP_193011.1 | response regulator | HE999704.1.gene2815. | Protein | 5e-43 | 52 |
| LBA0078 | YP_193011.1 | response regulator | NC_012469.1.7686381. | Protein | 8e-39 | 46 |
| LBA0078 | YP_193011.1 | response regulator | AE000516.2.gene3505. | Protein | 2e-33 | 45 |
| LBA0078 | YP_193011.1 | response regulator | NC_002695.1.915041.p | Protein | 5e-33 | 44 |
| LBA0078 | YP_193011.1 | response regulator | CP000034.1.gene3834. | Protein | 5e-33 | 44 |
| LBA0078 | YP_193011.1 | response regulator | CP001918.1.gene5135. | Protein | 2e-28 | 44 |
| LBA0078 | YP_193011.1 | response regulator | AE016830.1.gene1681. | Protein | 3e-38 | 43 |
| LBA0078 | YP_193011.1 | response regulator | CP000647.1.gene4257. | Protein | 8e-33 | 43 |
| LBA0078 | YP_193011.1 | response regulator | CP001138.1.gene4273. | Protein | 1e-32 | 43 |
| LBA0078 | YP_193011.1 | response regulator | BAC0533 | Protein | 8e-33 | 43 |
| LBA0078 | YP_193011.1 | response regulator | AF155139.2.orf0.gene | Protein | 1e-34 | 43 |
| LBA0078 | YP_193011.1 | response regulator | FJ349556.1.orf0.gene | Protein | 1e-34 | 43 |
| LBA0078 | YP_193011.1 | response regulator | NC_002952.2859858.p0 | Protein | 2e-33 | 42 |
| LBA0078 | YP_193011.1 | response regulator | NC_007622.3794948.p0 | Protein | 2e-33 | 42 |
| LBA0078 | YP_193011.1 | response regulator | AE015929.1.gene1106. | Protein | 6e-27 | 42 |
| LBA0078 | YP_193011.1 | response regulator | NC_003923.1003417.p0 | Protein | 2e-33 | 42 |
| LBA0078 | YP_193011.1 | response regulator | NC_013450.8614146.p0 | Protein | 2e-33 | 42 |
| LBA0078 | YP_193011.1 | response regulator | NC_002951.3238224.p0 | Protein | 2e-33 | 42 |
| LBA0078 | YP_193011.1 | response regulator | NC_007793.3914065.p0 | Protein | 2e-33 | 42 |
| LBA0078 | YP_193011.1 | response regulator | NC_002758.1121390.p0 | Protein | 2e-33 | 42 |
| LBA0078 | YP_193011.1 | response regulator | NC_010079.5776364.p0 | Protein | 2e-33 | 42 |
| LBA0078 | YP_193011.1 | response regulator | NC_014475.1.orf0.gen | Protein | 4e-33 | 42 |
| LBA0078 | YP_193011.1 | response regulator | AF162694.1.orf4.gene | Protein | 2e-33 | 42 |
| LBA0078 | YP_193011.1 | response regulator | NC_005054.2598277.p0 | Protein | 4e-33 | 42 |
| LBA0078 | YP_193011.1 | response regulator | CP004022.1.gene3215. | Protein | 3e-31 | 42 |
| LBA0078 | YP_193011.1 | response regulator | AM180355.1.gene1830. | Protein | 7e-34 | 41 |
| LBA0078 | YP_193011.1 | response regulator | DQ212986.1.gene4.p01 | Protein | 2e-33 | 41 |
| LBA0078 | YP_193011.1 | response regulator | NC_010410.6002989.p0 | Protein | 1e-23 | 41 |
| LBA0078 | YP_193011.1 | response regulator | NC_010400.5986590.p0 | Protein | 7e-23 | 41 |
| LBA0078 | YP_193011.1 | response regulator | NC_011595.7057856.p0 | Protein | 1e-23 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| LBA0078 | YP_193011.1 | response regulator | VFG1563 | Protein | 3e-32 | 42 |
| LBA0078 | YP_193011.1 | response regulator | VFG1702 | Protein | 3e-32 | 42 |
| LBA0078 | YP_193011.1 | response regulator | VFG1389 | Protein | 4e-29 | 41 |
