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Name : LBA0077 (LBA0077) Accession : YP_193010.1 Strain : Lactobacillus acidophilus NCFM Genome accession: NC_006814 Putative virulence/resistance : Unknown Product : transposase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG3666 EC number : - Position : 77542 - 79248 bp Length : 1707 bp Strand : - Note : - DNA sequence : ATGTATCAAAATTATATCACAGGTCAAACTGCTTTAACACTTAATCTGGACTTTACTATTCCTAGCAATCATTTAGCTAA TATCATCAGCCAGTTTGTGGATTCCATTCCTGAAGATGTCTTGCTAGGAAAAACTGCTAAAACAGGCCGCCCTGCTTATC ATCCAGCCATGATGCTTAAAATTTTACTTTTCGCATATTCTAGAAGAGTATTTTCAGGCAGAAAAATTGAATTAATGCTG GAAGAAAATGTGCCTATGATGGTACTAGCAGACCATCAAAAGATTTCATACCATACTATCAATAACTTTAGATCTAGCAA TCACGCCAATGAGTTGGTTAAGAAAAGCTTTCTTTATTTTACGAATCTTTTAGAAGCAGAAGGTCTAATCAATGAAGGTG CTGTCTTTATCGATGGTACTAAGATCGAAGCCGATGCCAATCGCTATACTTTCGTTTGGCGCAAAGCAGTTGAAAAGTTT CATAAAAAGCTAAAAGGCCAAGCAGTTGAGCTTTATGATGAACTGATCGCCAAGGAAGTAGTCAAAGCAATGGCTCAAGA GAAAGTCCGGACTAGTCAAGGCTTGGCAGAACTAGCACAAGAAACAGAAGCAGAAATTGAAAAGCTGACTAAAAAAATTG AACAAGAGCCCAGGGCTATTCCTGGTGGTTCACCTAGAAAAGCAAGAAGACGCAGGCTTAAAAAGCTGCTTCATAAACTG AGGAAAGACTATGTTCCTAGAATGAAGAAATACGAAGAAGCAGAAGAAATCTTTGCTGGCCGCAATAGTTATTCCAAGAC CGACCACGATGCGACTTTCATGCATATGAAAGAAGATCATATGAAGAACGGTCAGCTTAAGCCAGGCTACAATATTCAAG CAGCTACTACAAATCAGTATGTAGTTGACTTTGCTTTATATCATAATCCTACTGATTTCAGAACTTTAGAACCATTTTTA AAGCAGATGTCCACGCTGGATAAGTTTGATAAGATTGTCGCCGATGCTGGTTATGGCAGCGAGGACAATTATTCTATGCT AGAAAAAGAACATCCAGACAAAAAATACTACATTCCCTACACCATGTATGAAAAGGAAAAGACCAGAAAATATCGTAGTG ATCCAACTAGGCTGGCTAACTGGTTCTATGATGAAAAGGATGATTACTATCTAGATCAAAATGGAGTCCGATTCAATTTC AAATATTACAGCCGGCGCAAAGATCGCTCGACTGACCAGGTTCGTGATTTTAAGGTTTATGAAGCAGATGAGTTTCAACT GACGCCAGAATTAGAGCGTTTAGCTAAAACCAAGAGCGGCCGACAACGTCAAGTACGCTACAATCCCAACTGGCAGTATT TAAAAGAAAAAGCTAAAGAAGTTCTCCAAAGTCCTGAGGGCAGACACATCTATAGTATGAGAAAGTATGATGTGGAGCCA ATTTTTGGACATTTGAAGAACATCTTTGGCATACGCCGAACTCATTTAAGAGGCAAAAAGAAGGTTGAAACGGATGTTGG AATAGCCTTCATAATGATGAATTTAAGCAAATATTGGAACAGAAGATGGTCTCGGGTCCAATCTTCTTTATGCAAAATAA AAAAGGCGGTCAAGCAACTCAAATCAAGAGTTGGATTGATCGTCTTTTGGTATCTGAGGATTAGTTATTTCCCAGACACT TTTCTATTTACCTCTTGTGTTATATAG Protein sequence : MYQNYITGQTALTLNLDFTIPSNHLANIISQFVDSIPEDVLLGKTAKTGRPAYHPAMMLKILLFAYSRRVFSGRKIELML EENVPMMVLADHQKISYHTINNFRSSNHANELVKKSFLYFTNLLEAEGLINEGAVFIDGTKIEADANRYTFVWRKAVEKF HKKLKGQAVELYDELIAKEVVKAMAQEKVRTSQGLAELAQETEAEIEKLTKKIEQEPRAIPGGSPRKARRRRLKKLLHKL RKDYVPRMKKYEEAEEIFAGRNSYSKTDHDATFMHMKEDHMKNGQLKPGYNIQAATTNQYVVDFALYHNPTDFRTLEPFL KQMSTLDKFDKIVADAGYGSEDNYSMLEKEHPDKKYYIPYTMYEKEKTRKYRSDPTRLANWFYDEKDDYYLDQNGVRFNF KYYSRRKDRSTDQVRDFKVYEADEFQLTPELERLAKTKSGRQRQVRYNPNWQYLKEKAKEVLQSPEGRHIYSMRKYDVEP IFGHLKNIFGIRRTHLRGKKKVETDVGIAFIMMNLSKYWNRRWSRVQSSLCKIKKAVKQLKSRVGLIVFWYLRISYFPDT FLFTSCVI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SACOL0036 | YP_184947.1 | IS1272 transposase | Not tested | Type-I SCCmec | Protein | 4e-77 | 42 |
| SAMSHR1132_00350 | YP_005324559.1 | putative transposase | Not tested | Type-IIIinv SCCmec | Protein | 4e-77 | 42 |
| MW0034 | NP_644849.1 | hypothetical protein | Not tested | Type-IV SCCmec | Protein | 4e-77 | 42 |
| unnamed | BAA86649.1 | hypothetical protein | Not tested | Type-I SCCmec | Protein | 3e-77 | 42 |
| SAUSA300_0034 | YP_492755.1 | IS1272, transposase | Not tested | Type-IV SCCmec | Protein | 1e-74 | 42 |
| tnp | YP_254534.1 | IS1272 transposase | Not tested | ¥ðSh2 | Protein | 9e-72 | 41 |
