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Name : clpC (LBA0283) Accession : YP_193207.1 Strain : Lactobacillus acidophilus NCFM Genome accession: NC_006814 Putative virulence/resistance : Virulence Product : ATPase Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 276367 - 278844 bp Length : 2478 bp Strand : + Note : ClpC DNA sequence : ATGGAAAACTCATACAGTAAAAGTGTAAATCAAGTGTTGGAAATTGCGCGTGAACAAGCACAGAATTTCCATCATCGTTT AATCGGAACAGAACATATTTTATTAGCCTTAGTAATTGAAACTGATGGCGAAGCTGGAAAAATTTTACGTTCATGGGGGC TGACGCCTACCGCTATACGTGAAGAAATTGAAAGATATACAGGATATGGCTCAGCTCCCAAGGCTAGCTATATGGAAATG TCACCTCGATTGAGCTTGGCTTTAGATTATGCTAAAAGACAAGCAGAACAAGGTGGATATAAAGAAATTAAAACCAATCA TGTGTTATTAGGTATAACTGCTAGTGAGCAAGTTTTATCTGCAATGATTTTGAAAAACTTAAGCGTAGATATCAGTCGAT TACGTCAAGATGCTATCGACAGCTTGGAACAGGATCAAGATTTTAATGATTCTGCTAATTGGTTAGGTAATAGTGATTCT AACCAAAAGAAACGTAAGAATAGCACTACGCCAACCTTGGATAAAGTAGCAATTAACTTGAATCAACGTACACGTGAAGG AAATATTGATCCTGTTATTGGACGTGATAAGGAAATTGAACGTGTAATTCAAATTTTGTCACGTAGAACTAAGAATAATC CGGTTTTAGTAGGTGAGCCAGGTGTAGGTAAGACGGCTGTTGCTGAAGCAATTGCTACTGAAATTGTTAAAAAGAGAGTG CCAGAAGATCTGTTAGATAAGCGAGTTATGGCATTAAATATGGGTAACTTGGTTGCTGGTACTAAATATCGTGGTGAATT CGAAGATCGAATGAAGAAGATCTTGGATGAAATTGCTAAAGATGGCAAAGTTATCTTATTTGTTGATGAAATGCATACTT TAATTGGTGCCGGTGGTGCTGAAGGCGCAATTGATGCTTCTAATATTTTAAAGCCATCACTTGCTCGTGGTGATGTTCAA ATGATTGGTGCTACTACATTTGATGAATACCAAAAATACATTGAAAAAGATCAAGCTTTGGCAAGACGTTTCCAACAAGT GCGCTTAAATGAACCTTCAAAGAAAGATACATTAGCAATTTTGGAAGGTTTAAAACCCAAGTATGAAAAATTCCATCATG TTACTATTACTGAAGAAAGTCTAGAAGACGCAGTTGATTTATCTAGTCGATATATTTCTGATCGCTTTTTACCAGATAAA GCCATTGACTTGGTAGACGAAGCTAGTGCTGCTGTAAAAATCAAAAATAATGTTAATTCTGATGACGAATTAGTACAGAT TAATAACAAGATTAAAAATTTAATTGATCAAAAAAATGAAGCAGCAGCAAGTCAAAACTTCGTAAAAGCTGCTCAATTAC AAGATGAGCAAAATAATTTGCAAGCTCGTCGTGAAAAATTAGTAAATACTTTACATGAAAAAATTAGTGCTAATGCGACT GTTGAGCCCGAAGATATTGCCAAAGTAGTATCTGATTGGACTGGCGTTCCTGTTACCCAAATGAAACGTAATGAAACTCG TCAATTAGCTAATTTAGAAGGTATTTTACATAAGCGAGTTATTGGTCAAGATAAGGCTGTTTCTGCAGTTGCTCGTGCAA TCCGTAGAAGTAGAAGCGGAATTAAGGATGAACGTCGTCCAATTGGCTCATTCTTGTTCTTAGGCCCAACTGGTGTGGGT AAAACAGAATTGGCTAAATCTGTTGCTGCAGCAATGTTTGGCTCAGAGGATAACCTGATACGGCTTGATATGTCTGAATA CATGGATCAAATCGCTTCAAGTAAATTGATCGGTTCAGCACCAGGCTATGTAGGTTATGAAGAAGGCGGTCAACTTTCAG AACAAGTTCGTCGCCATCCATATTCAGTTGTGTTGCTCGATGAAGTAGAAAAAGCTCATCCTGATGTATTTAATCTCTTA CTTCAGGTCTTGGATGAAGGATTTATGACTGATTCTAAGGGAAGGAAAGTTGATTTTAGAAATACAATCATTATTATGAC TTCTAACCTTGGTTCACGTTCATTATTTGATGGCAATGCGGTTGGATTCAATGCGGATAAAATTGATCAAGCAAAAGTAA GACAAGCGAAAGTTCAACAAGCTATTAAACAGTTCTTCCGCCCTGAATTTTTAAACAGAATTGATGAAACTATTGTCTTT GATGAATTAACTAAGAAACAACTTCGTAACATTGTAAGTTTACTTACTAATAAATTGGTAGTTCGTTTACAAAGAAAAGG TATTACTTTGAAACTTTCACGTGCTGCTTTAGATAAGATCGTACAAGATGGTTATGATCCAGAAAATGGTGCTCGTCCAC TTAAGAGAGCTATTCAAAATGATGTGGAAGATAAAGTTGCCGAAATGTTAATTAATGGGGAAGTTAAGAGTGGTGATACT CTTAAAATTGGTAGTCAACATGGTAATTTGAAATTCGAAGTTGTTGCACCTAAAAAAGAAGTAGAAAAAGTCAAGTAG Protein sequence : MENSYSKSVNQVLEIAREQAQNFHHRLIGTEHILLALVIETDGEAGKILRSWGLTPTAIREEIERYTGYGSAPKASYMEM SPRLSLALDYAKRQAEQGGYKEIKTNHVLLGITASEQVLSAMILKNLSVDISRLRQDAIDSLEQDQDFNDSANWLGNSDS NQKKRKNSTTPTLDKVAINLNQRTREGNIDPVIGRDKEIERVIQILSRRTKNNPVLVGEPGVGKTAVAEAIATEIVKKRV PEDLLDKRVMALNMGNLVAGTKYRGEFEDRMKKILDEIAKDGKVILFVDEMHTLIGAGGAEGAIDASNILKPSLARGDVQ MIGATTFDEYQKYIEKDQALARRFQQVRLNEPSKKDTLAILEGLKPKYEKFHHVTITEESLEDAVDLSSRYISDRFLPDK AIDLVDEASAAVKIKNNVNSDDELVQINNKIKNLIDQKNEAAASQNFVKAAQLQDEQNNLQARREKLVNTLHEKISANAT VEPEDIAKVVSDWTGVPVTQMKRNETRQLANLEGILHKRVIGQDKAVSAVARAIRRSRSGIKDERRPIGSFLFLGPTGVG KTELAKSVAAAMFGSEDNLIRLDMSEYMDQIASSKLIGSAPGYVGYEEGGQLSEQVRRHPYSVVLLDEVEKAHPDVFNLL LQVLDEGFMTDSKGRKVDFRNTIIIMTSNLGSRSLFDGNAVGFNADKIDQAKVRQAKVQQAIKQFFRPEFLNRIDETIVF DELTKKQLRNIVSLLTNKLVVRLQRKGITLKLSRAALDKIVQDGYDPENGARPLKRAIQNDVEDKVAEMLINGEVKSGDT LKIGSQHGNLKFEVVAPKKEVEKVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 3e-168 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_193207.1 | ATPase | VFG0079 | Protein | 0.0 | 52 |
| clpC | YP_193207.1 | ATPase | VFG0080 | Protein | 6e-143 | 49 |
