Gene Information

Name : LBA1838 (LBA1838)
Accession : YP_194671.1
Strain : Lactobacillus acidophilus NCFM
Genome accession: NC_006814
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1850711 - 1851385 bp
Length : 675 bp
Strand : -
Note : -

DNA sequence : 
ATGGCAGTAATTGAATTAAAAAATGTTAAGAAGATTTATGGTAAAGGCGATGCGCAAGTTATAGCTTTACAAGATATTAA
TTTTGTTGCTAATAAAGGTGAAGTTGTCTTAATAATGGGACCATCAGGTGCAGGAAAGAGTACATTTTTAACAATCGCTG
GTTCTTTGCAAAAACCTACTTCAGGTGAGGTAATAATTGATGGTGATGATATCGGCAACTTATCAGCTAAAAAGAGTAAT
GCACTTCGCTTGACTAAAATTGGTTTTGTATTACAAGCATACAATTTGGTTCCATTTTTAACGGTTGAGGAACAATTTGT
TTTAGTAGATAAAGTCAAAAAGCAAAATAACCTCTCCAAAGATGAATTGGATAAGTTATTAAAGCAGTTAGGAATTACGA
AGTTATTGAAAAAATATCCTGGGGAATTATCTGGTGGTCAACAACAAAGAGCAGCAATTGCACGTGCACTTTATGCTAAT
CCAGAAATTCTTTTGGCAGATGAACCTACTGCTTCACTTGATACCAAAAACGTTGAAGAAGTAGGACAATTATTTAAAGA
TCTAGCTAAAAAGCGTAATAAAGCTGTGATGTTAGTTACTCACGATCCGCGTCTAGAAAAATATGCTGATCATATTTATG
AGATGATGGATGGTAAAATGACTCAGAAAAAATAA

Protein sequence : 
MAVIELKNVKKIYGKGDAQVIALQDINFVANKGEVVLIMGPSGAGKSTFLTIAGSLQKPTSGEVIIDGDDIGNLSAKKSN
ALRLTKIGFVLQAYNLVPFLTVEEQFVLVDKVKKQNNLSKDELDKLLKQLGITKLLKKYPGELSGGQQQRAAIARALYAN
PEILLADEPTASLDTKNVEEVGQLFKDLAKKRNKAVMLVTHDPRLEKYADHIYEMMDGKMTQKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 2e-42 49
SARLGA251_00480 YP_005754062.1 ABC-type transport system ATPase Not tested Type-XI SCCmec Protein 5e-38 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LBA1838 YP_194671.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-32 43
LBA1838 YP_194671.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 4e-26 42
LBA1838 YP_194671.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-29 41