Gene Information

Name : epsC (LBA1735)
Accession : YP_194578.1
Strain : Lactobacillus acidophilus NCFM
Genome accession: NC_006814
Putative virulence/resistance : Virulence
Product : exopolysaccharide biosynthesis protein
Function : -
COG functional category : D : Cell cycle control, cell division, chromosome partitioning
COG ID : COG0489
EC number : -
Position : 1768722 - 1769504 bp
Length : 783 bp
Strand : -
Note : EpsC

DNA sequence : 
ATGCCATTATTTAAGAAAAAGCGTGGTACAGATGAAACTATTAAACATGGTGCTAAGTTAATCACTGTAGCTAAGCCAAA
GAGTCCAATAGCTGAACAATTCCGTACTGTTCGTACTAATATTAACTTTATGGCAGTGGATCATGACATTAAGTCTTTAG
CATTTACTTCTGCTAATATTAGTGAAGGTAAATCTACTGTGGCTGCTAACGTTGCTGTTACTTATGCTCAAGCAGGTCGT
AAAGTCTTATTGGTCGATGCCGACTTACGTAGACCTACAGTGCACTCAACCTTTAACTTAAGTAATCATGTTGGTCTTAG
TACGGTTATCTCTTCAACTGCTAAGGAAGTTGATCTTGATAGCGTAGTACAAGAGAGCGGCGTAGATAATCTTTACGTGT
TAACGGCTGGTCCGATGCCACCTAACCCGGCAGAACTGATAGGTTCTAAGCGTATGCGTGACTTTGTTAAACTTACTGAA
GAACACTACGATTTAGTTATTATCGACTTAGCTCCTGTTCTTGAAGTATCTGATACACAAGAACTTGCTAGTCACTTAGA
TGGGGTTGTCTTAGTAGTTCGCCAAGGGAAGACGCAAAAGATGGCCATTAAGCGTGCTGTTGAAATGCTTGAATTTGCAA
AGGCACGTATCTTGGGTTACATCATGAATGATGTAAGTTCTGATAATGCGGGTTATGGCTATGGTTACGGCTACGGCTAT
GGTTATGGCTACGGAGAAGAAGATACAAAGAAAAAAGGATTGTTCTCTAAATTTAGGAAGTAA

Protein sequence : 
MPLFKKKRGTDETIKHGAKLITVAKPKSPIAEQFRTVRTNINFMAVDHDIKSLAFTSANISEGKSTVAANVAVTYAQAGR
KVLLVDADLRRPTVHSTFNLSNHVGLSTVISSTAKEVDLDSVVQESGVDNLYVLTAGPMPPNPAELIGSKRMRDFVKLTE
EHYDLVIIDLAPVLEVSDTQELASHLDGVVLVVRQGKTQKMAIKRAVEMLEFAKARILGYIMNDVSSDNAGYGYGYGYGY
GYGYGEEDTKKKGLFSKFRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1B AAA64641.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-35 43
SSP0061 YP_300151.1 capsular polysaccharide synthesis protein Not tested SCC15305cap Protein 1e-32 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
epsC YP_194578.1 exopolysaccharide biosynthesis protein VFG1298 Protein 4e-35 41