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Name : LBA1626 (LBA1626) Accession : YP_194470.1 Strain : Lactobacillus acidophilus NCFM Genome accession: NC_006814 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1634900 - 1636207 bp Length : 1308 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTTGATATTAAAGTGATTCGCGAGAATCTTGATTGGTCAAAGAAAAAGTTAGCTACACGTGGCATTAAGCCAGAAGA ATTGGACGAATTAGTTGAAATTGATACTAAACGTCGTAAAGATTTGACTATGAGTGAACAATTGAAGGCTAAGCGTAACG ATGTTTCTAAGCAAATTGCTGAAAAAAAGCGTAATAAAGAAGACGCAAGCGATGCAATTGCTGAAATGCGTGAAGTAGGT AAAGAAATTAAGAAATTGGATAAAGAAGTTGACGAATTAACTGAAAAGCAAAATTACATTTTGCTTAGATTGCCTAACTT CCCAGCAGATTCAGATCCAATTGGTCCAGATGACAGCTACAATGAAGAAGTTCGTAAGTGGGAAGAACCAACTAAGTTTG ACTTCAAGCCAAAGGCTCACTGGGATCTTGGTACTGATCTTGGTATCTTAGACTGGGATCGTGCTTCTAAAGTTTCAGGT GCACGTTTTGTTTACTACATTGGTGCAGGTGCCCTTTTGGAACGTGCTGTATTTAACTTCTTCCTTGATGAAAACACTAA GGATGGTTATACAGAAATTATTCCACCATATTTGGTAAATGATGCTTCAATGCAAGGAACTGGTCAATTCCCTAAGTTCC ATGAAGACGTTTATACTATTGTAGATAACGATGATCCAGATAAGCCTCGTGATTTGACTTTAATTCCAACTGCTGAAGTT CCTTTGGTAAACTACTTTAGAAATGAAATTATTCACGAAAACAAATTACCAATTAATGTAACTGCTATGTCACCAGCATT CAGAAGTGAAGCAGGTTCTGCTGGTCGTGATACTCGTGGTTTAATTAGAATGCACGAATTTCGTAAGGTAGAAATGGTTA AGATTTGTAAACCTGATGAATCATGGGATGAACTTGAAAAGTTAACTCATAATGCAGAACATTTATTGCAAAAGCTTGGT TTACCATATCACGTAGTTGCTTTGTCAACTGGGGATGCAAGTTTCACTAGTGCTAAGACATACGACCTTGAAGTTTGGAT GCCAGCACAAGACAAGTACCGTGAAATCTCAAGTTGTTCAAACTGTACCGACTTCCAAGCTCGTCGTGCACAAATTCGTT ACCGTGATGAAGATGGTAAACTTCACTTAGCACATACTTTGAACGGTTCAGGTTTAGCAGTAGGCCGTTGTGTAGCTGCA ATTTTGGAAAACTACCAAAATGAAGATGGCTCAGTAACTGTTCCGGATGTTCTTGTACCTTACATGAATGGTATGAAGAA GATTACTAAGGAATCTGGTTTGATTTAG Protein sequence : MLDIKVIRENLDWSKKKLATRGIKPEELDELVEIDTKRRKDLTMSEQLKAKRNDVSKQIAEKKRNKEDASDAIAEMREVG KEIKKLDKEVDELTEKQNYILLRLPNFPADSDPIGPDDSYNEEVRKWEEPTKFDFKPKAHWDLGTDLGILDWDRASKVSG ARFVYYIGAGALLERAVFNFFLDENTKDGYTEIIPPYLVNDASMQGTGQFPKFHEDVYTIVDNDDPDKPRDLTLIPTAEV PLVNYFRNEIIHENKLPINVTAMSPAFRSEAGSAGRDTRGLIRMHEFRKVEMVKICKPDESWDELEKLTHNAEHLLQKLG LPYHVVALSTGDASFTSAKTYDLEVWMPAQDKYREISSCSNCTDFQARRAQIRYRDEDGKLHLAHTLNGSGLAVGRCVAA ILENYQNEDGSVTVPDVLVPYMNGMKKITKESGLI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 1e-130 | 65 |
