Gene Information

Name : ABC4044 (ABC4044)
Accession : YP_177536.1
Strain : Bacillus clausii KSM-K16
Genome accession: NC_006582
Putative virulence/resistance : Virulence
Product : TRAP-type transport system permease large protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 4217346 - 4218617 bp
Length : 1272 bp
Strand : -
Note : -

DNA sequence :
ATGTCGTTATTATTAGTCGGGTTGTTCTTATTTTTTATTATGGCAGGGATTCCAATTGCGTTTAGCCTTGGCCTGTCTTC
GTTGATTTATTTGCTTATCGCCGGCATTCCTTTGACGATCATTCCCCAAACGATGCTGTCCGGGATCAATTCATTTGTGT
TGCTCGCCATTCCAGCCTTTATTCTTGCTGGAAATTTAATGAACGCAGGAGGAATCACCACAAGGATCATTGATTTTGCC
AATGCCGTTGTTGGCCACATCCGCGGCGGGCTGGCGTTAACGAATGTCGCTTCTTCACTTGGGTTTGCGGGCATTTCAGG
TACGGCATTGTCCGACACAGCCAGCATTGGCTCAGTAATGATTCCGGCGATGAAAAAGCAAGGGTATGGCGCCGGTTTTT
CCGCTGCGGTTACGTCGATTTCCTCAACTGTTGGCCCGATGCTTCCGCCATCTTTGCCAATGATCATTATTGGTACTCTC
GCCAGCGTCTCGATTGGCGATTTGTTTCTTGCTGGTGCTATTCCTGGCATTCTATTGGCGATCGGCTTTTTAGTCGTTAC
GTATATCATTTCTGTGAAGCGCGGTTATCCAAAGGGAGAACGGCAGCCGTTTAAAACAGTCGTCACGTCATTTTTTGGCG
CCTTCTGGGCGTTGTTTATGGTCTTTATCATTTTATGGGGCATTCTTGGCGGCTATTTTACGCCAACAGAAGCAGCGGTC
GTTTGTGTGCTGTACGCATTGGTCGTCGGCGGTTTTGTTTATCGCGAGCTTAACTTTAAAGAAGTGCCAGGGCTGCTTGT
CAGCACACTGCGATCGACGTCTTCGATTTTGTTGCTTGTTGGTTTCGCCAATCTATTTGGCTGGATTTTGGTATCGGAAG
GTGTGCCTGTATTAATCGCAAATGGGATTTTGTCGATTACAGAAAACCCGATTCTTGTCATTCTCCTTATCATTCTTTTA
TTGCTTGTGATCGGCATGTTTATGGAAACGATTGCAGCTCTTGTCATCTTATTCCCTGTCTTATTGCCTGTCGCTACAAG
CGTCGGGATGGACCCTGTCCATTTTGGCGTAGTGATGGTATTGACATTGATGATTGGTTTGTCCACTCCGCCAGTAGGCG
TCTGTTTGTTTGTGGCTTCTAGCTTTGCGAAAGTGCCAATCGGCAAAACGGTTAAAGAACTGGTGCCATACTTTGCAATT
GCCATCGTCGTCTTGCTGGTTGTCGCCTATATTCCTCAACTATCTTTATTCTTGCCTAGTTTGTTTGAATGA

Protein sequence :
MSLLLVGLFLFFIMAGIPIAFSLGLSSLIYLLIAGIPLTIIPQTMLSGINSFVLLAIPAFILAGNLMNAGGITTRIIDFA
NAVVGHIRGGLALTNVASSLGFAGISGTALSDTASIGSVMIPAMKKQGYGAGFSAAVTSISSTVGPMLPPSLPMIIIGTL
ASVSIGDLFLAGAIPGILLAIGFLVVTYIISVKRGYPKGERQPFKTVVTSFFGAFWALFMVFIILWGILGGYFTPTEAAV
VCVLYALVVGGFVYRELNFKEVPGLLVSTLRSTSSILLLVGFANLFGWILVSEGVPVLIANGILSITENPILVILLIILL
LLVIGMFMETIAALVILFPVLLPVATSVGMDPVHFGVVMVLTLMIGLSTPPVGVCLFVASSFAKVPIGKTVKELVPYFAI
AIVVLLVVAYIPQLSLFLPSLFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 2e-49 45
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 2e-49 45
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 2e-49 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ABC4044 YP_177536.1 TRAP-type transport system permease large protein VFG1110 Protein 1e-49 45