Gene Information

Name : syc1810_d (syc1810_d)
Accession : YP_172520.1
Strain : Synechococcus elongatus PCC6301
Genome accession: NC_006576
Putative virulence/resistance : Virulence
Product : 3-deoxy-manno-octulosonate cytidylyltransferase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1212
EC number : 2.7.7.38
Position : 1956763 - 1957497 bp
Length : 735 bp
Strand : +
Note : CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS

DNA sequence :
ATGGTTCGAATTCTGGCAGTGATTCCCGCTCGCTACGCCTCAGAGCGGCTACCCGGCAAGGTACTGCTGCCGATCGCCGG
TCGACCGATGCTGCAGTGGGTCTACGAAGCCACGATCGCCAGCAATGTCTTTGATCAGGTGGCGATCGCCACGGAAGATC
CTCGAGTTGTAGAAGCAGCAGCGGCTTTTGGTGCTGAAGCGATTCTGACCAGTGCGGATCTGGCTTCAGGCACCGATCGC
GTTGCGGAAGCCAGCTTGCACTTCCCTGACTGCAAAGTGATCGCCAACGTCCAAGGCGATCAGCCGTTTGTGACGCCGGG
ATTGCTGCAAGCCCTCGTTTCGCCCTACCGGGCGGGGGAACTGCCGGAGATGACGACGGTGGGCGGCCCCTACGATCCAG
CGCAGGATGCTGATGATCCCAACACAGTCAAAGTGGTCTGCGATCAACGCGGCAATGCCCTTTATTTCTCGCGATCGGCG
ATTCCCTATCCTCGAACCGTGGTGCATGACCTGCCGGTCTATCATCACTTTGGCCTCTACGCTTTCCGGCGCGATTTTCT
GGCGCAATATCGTCAACTCCCGCCGACCCCACTGGAACGCTGCGAAAGTTTGGAGCAGTTGCGGGTGCTAGAACAGGGCT
ATCGGATCCGGGTGGTGCCCTGTGCCGATAAGGTCATTGAAGTCAACACAGCAGACGATCTGGAGAGGGCAAACGCATGG
GCCAGTCAACGCTAA

Protein sequence :
MVRILAVIPARYASERLPGKVLLPIAGRPMLQWVYEATIASNVFDQVAIATEDPRVVEAAAAFGAEAILTSADLASGTDR
VAEASLHFPDCKVIANVQGDQPFVTPGLLQALVSPYRAGELPEMTTVGGPYDPAQDADDPNTVKVVCDQRGNALYFSRSA
IPYPRTVVHDLPVYHHFGLYAFRRDFLAQYRQLPPTPLERCESLEQLRVLEQGYRIRVVPCADKVIEVNTADDLERANAW
ASQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsU CAE85213.1 KpsU protein Virulence PAI V 536 Protein 1e-35 44
kpsU YP_854332.1 3-deoxy-manno-octulosonate cytidylyltransferase Not tested PAI I APEC-O1 Protein 3e-34 43
kpsU AAZ04469.1 CMP-KDO synthetase Virulence PAI I APEC-O1 Protein 2e-34 43