Name : lysS (syc1691_d) Accession : YP_172401.1 Strain : Synechococcus elongatus PCC6301 Genome accession: NC_006576 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1828657 - 1830171 bp Length : 1515 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCTGATTTGCGCGCCACCCGCCTCGAAAAAGCCCTGCAATTGCGAGAGCTGGGATTTGAGCCCTACGCCTACCGTTG GGACTGTAGCCATAGTGCCGCGCAGCTCCAAGCGCTCTATGCTGACTTGCCAGCCGGGGAGGAAGTGGCGGTTGAGGTCG CGATCGCGGGCCGAATTATGGCGCGGCGCGTCTTCGGGAAGCTGGCCTTCTTCACGCTGCAGGATGAAAGCGGCCAAATT CAGCTCTACCTCGAGAAGCAGCGGCTCAGTGAATCGATGGCCGCGATCGATGCCGAAGCTTTCAGTCACCTCAAAGCCCT GACAGATGTGGGCGACATTCTTGGTGTCAAAGGTAGTGTGCGCCGCACGGAGAAAGGCGAACTCTCGATCGCAGTGGATC AGTACGCCATTCTCACTAAGTCCCTGCAACCCCTGCCGGATAAATGGCATGGACTGACGGATGTGGAGAAGCGCTACCGC CAGCGCTACGTGGACCTGATCGTCAACCCAGAAGTACGGGAGACGTTTCGGCGTCGCGCCAAAATCACCGCTGCCATTCG TCGCCACCTCGAAGATCAGGGCTTCATCGAAATCGAAACGCCAGTGCTGCAAGCGGAGGCAGGCGGTGCAGAAGCTCGGC CTTTCATCACTTACCACAACACCTTAGAACTCGACCTTTATCTGCGAATTGCAACCGAGTTGCACCTCAAGCGCCTAATT GTCGGCGGCTTCGAGAAAGTGTTTGAACTAGGGCGCATTTTCCGCAACGAGGGCATTTCAACCCGCCACAACCCTGAGTT CACCTCGATCGAGGTCTATCAGGCCTATGCCGACTACGAAGACATGATGCGGCTAACGGAAACCTTGATTGCCCAAGTTG CTGAGCAGGTGGTGGGGTCGCTGCAAGTGCCCTACCAAGGTCAGACGATCGATCTGGCGCCACCGTGGAAACGGGCAACG ATGGCGGAACTGGTGTTGGCAGCGACGGGGATCGACTTCGAGTCCCTGAAAGACCTAGAAGCAGGAATTGCAGCCGTGAA AGCAGCAGGTATTCCGGTGCCTGAGGACTGCCCCAACCTCGGCAAACTGCTCAACCACTGCTTCGAAGAAAAAGTGGAAG CAACGCTGATTCAGCCGACGTTTGTGATCGACTATCCGGTGGAGATTTCGCCGCTGGCGAAGCCGCACCGCAGCAAACCA GGGTTAGTGGAACGCTTTGAGCTATTTATTGTCGGCCGAGAAACTGCTAACAGCTTCTCGGAGTTAACCGATCCGGTGGA TCAGCGACAACGGTTGGAAGCGCAAGCGGCAGACAAAGCAGCAGGCAATGTCGAAGCGAACGACGTCGACGAAGACTTCT TGCTGGCGCTGGAGCATGGCATGCCACCGACCGGTGGCCTCGGAATTGGCATCGATCGCCTCGTGATGTTGCTGACCGAT AGCCCCAGCATCCGTGACGTGATTGCCTTCCCACTGCTACGCCCCGAAGCGAGCTCGGAAGAGGCCGAAGCCTAA Protein sequence : MSDLRATRLEKALQLRELGFEPYAYRWDCSHSAAQLQALYADLPAGEEVAVEVAIAGRIMARRVFGKLAFFTLQDESGQI QLYLEKQRLSESMAAIDAEAFSHLKALTDVGDILGVKGSVRRTEKGELSIAVDQYAILTKSLQPLPDKWHGLTDVEKRYR QRYVDLIVNPEVRETFRRRAKITAAIRRHLEDQGFIEIETPVLQAEAGGAEARPFITYHNTLELDLYLRIATELHLKRLI VGGFEKVFELGRIFRNEGISTRHNPEFTSIEVYQAYADYEDMMRLTETLIAQVAEQVVGSLQVPYQGQTIDLAPPWKRAT MAELVLAATGIDFESLKDLEAGIAAVKAAGIPVPEDCPNLGKLLNHCFEEKVEATLIQPTFVIDYPVEISPLAKPHRSKP GLVERFELFIVGRETANSFSELTDPVDQRQRLEAQAADKAAGNVEANDVDEDFLLALEHGMPPTGGLGIGIDRLVMLLTD SPSIRDVIAFPLLRPEASSEEAEA |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-99 | 48 |
lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 7e-78 | 42 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
lysS | YP_172401.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-99 | 48 |