Gene Information

Name : syc0151_d (syc0151_d)
Accession : YP_170861.1
Strain : Synechococcus elongatus PCC6301
Genome accession: NC_006576
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 164716 - 165405 bp
Length : 690 bp
Strand : +
Note : OmpR subfamily

DNA sequence : 
ATGCGAATTCTGCTCGTTGACGACGAAGAAGCCCTGACTGCGCCACCCCATCGCATGTTGCGCCGCGAAGGCTACGACGT
GGATGTGGCGAGTGATGGTCAGACGGGAGAACAGCTGGCAACCCACCAGCCCTACGACTTGCTGATTCTTGATTGGATGC
TGCCCGAGCGATCGGGGTTGGATCTCTGTCGCTCCGTTCGACAGCGCGATCGCCAAGTACCAGTTCTGTTTCTGACTGCT
CGCGATACAGTCGATGACCGAGTTCAGGGCTTAGATGCCGGAGCTGACGACTACTTGGTTAAACCCTTCGAACTGAAGGA
ACTCCTAGCCCGCGTCCGAGCCTTGCTCCGGCGATCGCCCCGACAGGAAACCTCGGAGGCTCCGCGCCTTGCGGGTGGCG
ATCTGGAACTGGATACGCCCAACCAACTGGCCTATCGTCAGGCCCGTCGCATTGAGCTGTCCGAAAAAGAGACGCAGTTG
CTGGCAGTACTCATGCAGCATCCGGGCCAACTGGTCAGCCACCAAGAGCTGCAAGCGCAAGTGTGGGGTTCTGCCAATCC
CCCCAGTAGCAATGTTCTGGCCGCACAAATTCGCCTCCTGCGCCGCAAGCTGGAAGCCCCGGGCGAAACGCCGCTGATCT
TTAGCGTCTATGGCAAAGGTTACCGCTTCCAATTCGGAGATTTGGCCTAA

Protein sequence : 
MRILLVDDEEALTAPPHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGLDLCRSVRQRDRQVPVLFLTA
RDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRRSPRQETSEAPRLAGGDLELDTPNQLAYRQARRIELSEKETQL
LAVLMQHPGQLVSHQELQAQVWGSANPPSSNVLAAQIRLLRRKLEAPGETPLIFSVYGKGYRFQFGDLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-32 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-31 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
syc0151_d YP_170861.1 two-component response regulator BAC0288 Protein 1e-30 43
syc0151_d YP_170861.1 two-component response regulator BAC0125 Protein 5e-33 43
syc0151_d YP_170861.1 two-component response regulator BAC0083 Protein 3e-31 43
syc0151_d YP_170861.1 two-component response regulator BAC0197 Protein 3e-28 43
syc0151_d YP_170861.1 two-component response regulator HE999704.1.gene1528. Protein 3e-30 41
syc0151_d YP_170861.1 two-component response regulator BAC0533 Protein 2e-18 41
syc0151_d YP_170861.1 two-component response regulator CP000647.1.gene4257. Protein 2e-18 41
syc0151_d YP_170861.1 two-component response regulator BAC0638 Protein 5e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
syc0151_d YP_170861.1 two-component response regulator VFG1390 Protein 5e-33 45
syc0151_d YP_170861.1 two-component response regulator VFG0596 Protein 8e-33 43
syc0151_d YP_170861.1 two-component response regulator VFG1389 Protein 1e-25 43