Gene Information

Name : xerD (FTT_0154)
Accession : YP_169220.1
Strain : Francisella tularensis SCHU S4
Genome accession: NC_006570
Putative virulence/resistance : Unknown
Product : integrase/recombinase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 170083 - 170961 bp
Length : 879 bp
Strand : +
Note : Similar to Q7ZAJ8 (Q7ZAJ8) Integrase/recombinase XerD from Shewanella oneidensis (300 aa). FASTA: opt: 1039 Z-score: 1285.0 E(): 1.1e-63 Smith-Waterman score: 1039; 52.414 identity in 290 aa overlap

DNA sequence : 
GTGTCCTCAGCTGTTGATGCTTTTCTTGATAATCTCTGGCTTGAGCATGGATTAAGCCAAAATACTATTTCATCTTATCG
TACTGATCTTAAATTCTTACAAAATTATTTTGCAAAAACTGATTTAATTAGTTTAGATTTTGAGCAGTTATATGCGTTTA
TTTCATATCGTTCAAAAAATGGTTATAGCAGTCATTCTAATGCTCGAATGATATCGACATTGCGTAAATTCTATGCTTGG
CTTATCTCAACTGGTCAAACTAATAATAATCCTACAGCTAAGCTAACATTACCAAAATTAGCCAAGAAGTTACCTAAAGA
TATGACAGAAACTGATGTTGAGAGATTGCTTCAAGCTCCTGATATGACAGAGGATGTTGGTATTCGCGATAAAGCAATGC
TTGAACTGATGTATGCTACAGGTTTACGTGTAAGTGAATTGGTCGGGCTTAATATTGATGATATCGATATCAATATTGGG
GTAATTCAGGTAATGGGTAAGGGTTCAAAAGAGCGTATAGTGCCAATAGGTGAGTATGCATTGGAGTATTTGCAAAAATA
TTTTGCAGAAGCTCGCAGGAGTTTATCTGAAAATTTCAAAGAGAAAGCAGTTTTTATCAGTAAGCATGCAAAAAGAATAA
CGCGTCAGTCTTTTTGGCACAGAATCAAAAACTATGCACTTATCGCTGGTATAAATACCGATATTTCGCCTCATACCCTA
AGACATGCATTTGCTACTCACTTACTCAATCATGGGGCTGATTTGAGATCGGTACAGCTATTGCTTGGACATAGTAATGT
TTCAACAACAACTATTTATACACATATATCTCAAAATCGCTTACAAGAGATTTATCAAAAACATCATCCAAGGGGATAA

Protein sequence : 
MSSAVDAFLDNLWLEHGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSHSNARMISTLRKFYAW
LISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLELMYATGLRVSELVGLNIDDIDINIG
VIQVMGKGSKERIVPIGEYALEYLQKYFAEARRSLSENFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTL
RHAFATHLLNHGADLRSVQLLLGHSNVSTTTIYTHISQNRLQEIYQKHHPRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 6e-47 52
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 6e-47 52