|
Name : hpcC (SPOA0027) Accession : YP_164858.1 Strain : Genome accession: NC_006569 Putative virulence/resistance : Virulence Product : 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.60 Position : 23017 - 24525 bp Length : 1509 bp Strand : - Note : identified by similarity to SP:P42269; match to protein family HMM PF00171 DNA sequence : ATGCCCGACCTCAGCACCAGGCTGGCCGATCTTGACCGACATCTCCAGCGGTTTCGCCGCGACGGGGTGATGAACCGGAT TGGCGGGCAGGACGTACCGGGCGGCGCGGGGCGGTTCGACAGCATCTCTCCGGTCGACAGATCGGTGATCTGTTCTGTGG CGCGCGGCGACGCGGCCGATATGGACGCGGCGGCAAGGGCCGCACATGCGGCCTTTCCCGCCTGGCGCGACATGCCCGCG ACCGAGCGGCGCGCCATCCTGATCCGCATCGCCGAAGGAATCGAGGCGCGAGCCGAGGAAATCGCGCTGTGTGAATGCTG GGACACCGGGCAGGCCTGGCGCTTCATGTCCAAGGCGGCGCTGCGCGGGGCCGAGAATTTCCGCTATTTCGCGGATCAGG TGGTGCAGGCGCGCGATGGGCAGCATCTGAAATCGCCCACTTTGATGAATATCACCACCCGCGTTCCGATCGGCCCGGTG GGGGTGATCACGCCGTGGAACACGCCGTTCATGCTGTCCACCTGGAAGATTGCGCCGGCGCTGGCCGCCGGTTGCACCGT GGTGCATAAACCCGCCGAGCTCAGCCCGCTGAGCGCGCGGCTGTTGATCGAGATCGCCGAAGAGGCGGGCCTGCCCCCCG GGGTGCTGAACCTGGTCAACGGATTTGGCGAGGATGCGGGCAAGGCGCTGACCGAACATCCGCTGATCAAGGCCGTGGCC TTTGTCGGCGAAAGCCGCACCGGCAGCCTGATCGTGAAACAGGGGGCCGACACGCTGAAGCGGGTGCATCTGGAACTGGG CGGCAAGAACCCGGTGATCGTGTTCGACGATGCCGATACCGAGCGCGCGCTGGATGCGGTGATCTTCATGATCTACTCAA TCAACGGCGAACGCTGCACGTCCTCCTCGCGCTTGCTTGTGCAGGACACGATCCGCGAAGAGTTCGAGGCGCGGCTGGTC GAACGCGTGAACAACATCAAGGTGGGCCACCCGCTGGATCCGACAACCGAGATCGGGCCGCTGATCGGCGAGGAGCATTT TGCCAAGGTTACCAGCTACTTCGACATCGCGCGCCAGGACGGCGCCACCGTCGCAGCGGGCGGTGAGGTGGTGGGCGACC AAGGCTATTTCGTGCGCCCCACCCTGTTTACCGGCGCCAACAACCGGATGCGTATCGCGCGCGAAGAGATTTTCGGCCCG GTGCTGACCGCGATCCCGTTTTCGACGGAAGAAGAGGCGCTGCAAATCGCCAATGACACGCCCTATGGGCTGACCGGCTA TCTCTGGACTAACGACCTGACGCGCGCGCTGCGGTTCACCGACAAGCTCGAGGCCGGGATGATCTGGGTGAACTCCGAGA ATGTGCGCCACCTGCCCACCCCCTTTGGCGGGGTCAAGGCCAGCGGCATCGGCCGCGACGGCGGCGACTGGTCGTTTGAA TTCTACATGGAGCAGAAGCACATCGGCTTTGCCACCGGCCAGCACAAGATCCAGCGCCTGGGCGCCTGA Protein sequence : MPDLSTRLADLDRHLQRFRRDGVMNRIGGQDVPGGAGRFDSISPVDRSVICSVARGDAADMDAAARAAHAAFPAWRDMPA TERRAILIRIAEGIEARAEEIALCECWDTGQAWRFMSKAALRGAENFRYFADQVVQARDGQHLKSPTLMNITTRVPIGPV GVITPWNTPFMLSTWKIAPALAAGCTVVHKPAELSPLSARLLIEIAEEAGLPPGVLNLVNGFGEDAGKALTEHPLIKAVA FVGESRTGSLIVKQGADTLKRVHLELGGKNPVIVFDDADTERALDAVIFMIYSINGERCTSSSRLLVQDTIREEFEARLV ERVNNIKVGHPLDPTTEIGPLIGEEHFAKVTSYFDIARQDGATVAAGGEVVGDQGYFVRPTLFTGANNRMRIAREEIFGP VLTAIPFSTEEEALQIANDTPYGLTGYLWTNDLTRALRFTDKLEAGMIWVNSENVRHLPTPFGGVKASGIGRDGGDWSFE FYMEQKHIGFATGQHKIQRLGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hpaE | AAO17179.1 | HpaE | Not tested | tcd island | Protein | 2e-84 | 48 |
| VC0819 | NP_230467.2 | aldehyde dehydrogenase | Not tested | VPI-1 | Protein | 5e-65 | 42 |
| aldA | AAC12273.1 | aldehyde dehydrogenase | Virulence | VPI | Protein | 6e-65 | 42 |
| aldA | AAK20747.1 | aldehyde dehydrogenase | Virulence | VPI | Protein | 6e-65 | 42 |
| aldA | AAK20776.1 | aldehyde dehydrogenase | Virulence | VPI | Protein | 6e-65 | 42 |
| aldA-1 | YP_001216300.1 | aldehyde dehydrogenase | Not tested | VPI-1 | Protein | 1e-64 | 42 |
| unnamed | AAK01506.1 | putative aldehyde dehydrogenase | Not tested | PAGI-1 | Protein | 8e-60 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hpcC | YP_164858.1 | 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase | VFG0082 | Protein | 2e-65 | 42 |
