Gene Information

Name : ZMO2032 (ZMO2032)
Accession : YP_003377816.1
Strain : Zymomonas mobilis ZM4
Genome accession: NC_006526
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 1986824 - 1987333 bp
Length : 510 bp
Strand : +
Note : PFAM: DNA repair protein RadC; KEGG: rso:RSc2620 hypothetical protein

DNA sequence : 
ATGTCGCAACTGTCCTTTTCCTCGTTCGATGACGCTTTGCTGGTGCGTGACGCCCAAGGGCGCTACATGCCGGCATCGGT
GGATCAAATTCTCGAAGCGGCGCGCCAGGTCATCGAGCTGAAGATACAGCGTGGTGCTGAGTTCACCTCCCCGGCGCTGG
TCAAGGAGTACCTGCGCAACAAGCTGGCAGGCTTCGAGCATGAAGTCTTTGCAGTGCTGTTTCTGGACACGCGCCACCGG
CTGATCGAGTACCGGGAGATGTTCCACGGCACCATCGACAGTGCACCGGTGTACCCGCGTGAAGTGGTCAAGGAAGCCCT
GCGGCTCAATGCGGCGGCGGTCATCCTCTCGCACAACCATCCGAGCGGGAATCCTGAGCCGTCACAGGCCGACAGGGTGC
TGACGCAGCGACTCAAAAAGGCGCTGGGGCTGGTTGATATGCGGGTTCTTGACCACGTTATTGTCGCGGGTAGCACCACG
GAGTCATTTGCGGAGCGAGGCTTGATCTGA

Protein sequence : 
MSQLSFSSFDDALLVRDAQGRYMPASVDQILEAARQVIELKIQRGAEFTSPALVKEYLRNKLAGFEHEVFAVLFLDTRHR
LIEYREMFHGTIDSAPVYPREVVKEALRLNAAAVILSHNHPSGNPEPSQADRVLTQRLKKALGLVDMRVLDHVIVAGSTT
ESFAERGLI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-41 64
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-41 64
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-41 60
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 4e-38 57
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 2e-25 54
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 2e-25 54
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 1e-25 54
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 1e-25 54
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 1e-25 54
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 2e-25 54
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 5e-25 53
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 9e-25 53
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 4e-25 53
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 3e-25 53
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 2e-25 53
unnamed AAL08475.1 unknown Not tested SRL Protein 2e-25 53
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 6e-25 53
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 2e-25 53
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 6e-25 53
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 4e-25 53
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 2e-25 53
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 2e-24 52
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 5e-25 52
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 3e-30 48
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 2e-22 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ZMO2032 YP_003377816.1 DNA repair protein RadC VFG1119 Protein 6e-42 64
ZMO2032 YP_003377816.1 DNA repair protein RadC VFG1617 Protein 8e-26 54
ZMO2032 YP_003377816.1 DNA repair protein RadC VFG1678 Protein 7e-26 54
ZMO2032 YP_003377816.1 DNA repair protein RadC VFG1528 Protein 1e-25 53
ZMO2032 YP_003377816.1 DNA repair protein RadC VFG1066 Protein 8e-26 53
ZMO2032 YP_003377816.1 DNA repair protein RadC VFG0660 Protein 2e-25 53