Gene Information

Name : clpB (ebA6667)
Accession : YP_160835.1
Strain : Aromatoleum aromaticum EbN1
Genome accession: NC_006513
Putative virulence/resistance : Virulence
Product : ClpB protein
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 3954184 - 3956766 bp
Length : 2583 bp
Strand : -
Note : -

DNA sequence :
ATGCGCTTCGACAAGCTCACGACGAAGTTCCAGCAGGCTCTCTCCGATGCCCAGAGCATCGCAGTCGGCAACGACCAGCA
GTTCATCGAACCCCAGCACCTGCTGCTGGCGATGCTCGGCCAGGAGGATGCCGGCATCGTCTCGCTGCTGCAGCGTGCCG
GCGTCAACGTGCCGCCGCTCAAGGCTGCGCTCGACAAGGCGCTGACGCGGCTGCCGAAGGTCGAAGGGCACGGCGGCGAG
GTGCAGATCGGGCGCGACCTTTCGAATCTCCTGAATATCGCCGATCGCGAAGCGCAGAAGCGCGGCGACCAGTTTATCGC
CAGCGAGATGTTCTTGCTCGCGCTCGCTGAGGACAAGGGCGAGACCGGGCGCCTGCTGAAGGAGCACGGCCTGTCGCGCA
AGCCGCTTGAAGCGGCGATCACCGCGGTGCGAGGCGGCTCCGGCGTCGGCAGCCAGGATGCCGAAGGACAGCGCGAAGCG
CTCAACAAGTACTGTCTCGATCTCACCGATCGCGCGCGAGCGGGCAAGCTCGATCCGGTGATCGGGCGCGACGACGAGAT
CCGCCGCGCGATCCAGATCCTGCAGCGCCGCACGAAGAACAATCCGGTGCTGATCGGCGAGCCGGGGGTAGGCAAGACCG
CGATCGTCGAAGGCCTCGCGCAGCGTATCGTCAATGACGAGGTTCCCGAGACGCTCAAGGGCAAGCGCGTGCTGTCGCTC
GACATGGCGGCGCTGCTCGCGGGGGCGAAATACCGCGGCGAATTCGAGGAACGGCTCAAGGCCGTGCTGAAGGAGATCGC
GCAGGAAGAAGGGCGGATCATCGTCTTCATCGACGAGCTGCACACGATGGTCGGCGCCGGCAAGGCCGAAGGCGCGATCG
ACGCCGGCAACATGCTGAAGCCGGCGCTTGCGCGCGGCGAGCTGCACTGCATCGGCGCGACGACGCTCGACGAATATCGC
AAGTACATCGAAAAGGATGCCGCGCTCGAACGGCGCTTCCAGAAAGTGCTGGTGGACGAGCCGAGCGTGGAGTCGACGAT
CGCGATCCTGCGCGGCCTGCAGGAAAAATACGAACTGCACCACGGCGTCGACATCACCGACCCGGCGATCGTCGCCGCAG
CGGAGCTGTCGCATCGCTACATCACCGACCGGTTCCTGCCCGACAAGGCGATCGACCTGATCGACGAGGCCGCGGCGCGA
ATCAAGATGGAGATCGACTCAAAGCCGGAAGTCATGGACAAGCTCGAGCGTCGCCTGATCCAGCTCAAGATCGAGCAGGA
AGCGGTGAAGCGGGAAACCGACGAGGCGTCGCAGAAGCGTCTCGTGCTGATCCGCGACGAGATCGACAAGCTCGAGCGCG
AATACGCGAACCTCGACGAAATCTGGCGCTCGGAGAAGGCGAGCGTGCAGGGCAGCCAGCACATCAAGGAAGAGATCGAG
GCGCTGCGCACGCAGATGGCCGAGATGCAGCGGAAGGGCCAGTACGACAAGCTCGCCGAGCTGCAGTACGGCAAGCTCCC
GCAGCTCGAGGCGCAGCTGAAGGCGGCCGAATCGGCCGGCAGCGGCGAGCGCAAGTTCAAGCTGTTGCGCACCGAGGTCG
GCACCGAGGAGATCGCCGAAGTCGTGTCGCGCGCGACGGGCATTCCGGTCAGCAAGATGATGCAGGGCGAGCGCGAGAAG
CTGCTGAAGATGGAAGAGCGGCTGCACCAGCGCGTCGTCGGCCAGGACGAGGCGGTGCGGCTCGTCGCGGATGCGATCCG
CCGCTCGCGCGCCGGCCTTTCGGACGAGAACCGCCCGTACGGCTCGTTCCTGTTCCTGGGCCCGACCGGCGTCGGCAAGA
CCGAGCTCTGCAAGACGCTCGCCGAGTTCCTGTTCGATTCGGAAGAGCACCTGATCCGCATCGACATGAGCGAATTCATG
GAAAAGCACTCGGTTGCCCGCCTCATCGGCGCCCCGCCGGGCTATGTGGGCTATGAGGAAGGTGGCTACCTGACGGAGCA
GGTGCGCCGCAAGCCCTACAGCGTGATCCTCTTCGACGAGGTGGAGAAGGCGCACCCGGACGTGTTCAACGTGCTGCTGC
AGGTGCTCGACGACGGCCGCATGACAGACGGGCAGGGACGCACCGTCGACTTCAAGAACACCGTCATCGTCATGACATCG
AACCTCGGCAGCCAGATGATCCAGCAAATGGCAGGCGATGATCATCAAGTCATCAAGCTTGCCGTGATGGCCGAAGTCAA
GACCTACTTCCGTCCGGAGTTCGTCAACCGCATCGACGAGGTCGTCGTGTTCCACGCGCTCGACGAGAAGCACATCGCGA
GCATCGCGCGCATCCAGCTCCAGTACCTCGACAAGCGGCTGGCGCGGCTGGACATGTCGATGGAGGTATCGGACGCGGCG
CTTGCGGAGCTTGCGTCGGCCGGTTTCGATCCGGTGTTCGGCGCGCGCCCGCTCAAGCGCGCGATCCAGGAGCGCATCGA
AAATCCGCTCGCGAAGGCGATCCTGGAAGGGCAGTTCGGCGCAAAGGACAAGGTGCTCGTCGATGTCGAAGGCGGGCGGA
TAGTCTTTGCGAAGGGCGACTGA

Protein sequence :
MRFDKLTTKFQQALSDAQSIAVGNDQQFIEPQHLLLAMLGQEDAGIVSLLQRAGVNVPPLKAALDKALTRLPKVEGHGGE
VQIGRDLSNLLNIADREAQKRGDQFIASEMFLLALAEDKGETGRLLKEHGLSRKPLEAAITAVRGGSGVGSQDAEGQREA
LNKYCLDLTDRARAGKLDPVIGRDDEIRRAIQILQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNDEVPETLKGKRVLSL
DMAALLAGAKYRGEFEERLKAVLKEIAQEEGRIIVFIDELHTMVGAGKAEGAIDAGNMLKPALARGELHCIGATTLDEYR
KYIEKDAALERRFQKVLVDEPSVESTIAILRGLQEKYELHHGVDITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAAAR
IKMEIDSKPEVMDKLERRLIQLKIEQEAVKRETDEASQKRLVLIRDEIDKLEREYANLDEIWRSEKASVQGSQHIKEEIE
ALRTQMAEMQRKGQYDKLAELQYGKLPQLEAQLKAAESAGSGERKFKLLRTEVGTEEIAEVVSRATGIPVSKMMQGEREK
LLKMEERLHQRVVGQDEAVRLVADAIRRSRAGLSDENRPYGSFLFLGPTGVGKTELCKTLAEFLFDSEEHLIRIDMSEFM
EKHSVARLIGAPPGYVGYEEGGYLTEQVRRKPYSVILFDEVEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTS
NLGSQMIQQMAGDDHQVIKLAVMAEVKTYFRPEFVNRIDEVVVFHALDEKHIASIARIQLQYLDKRLARLDMSMEVSDAA
LAELASAGFDPVFGARPLKRAIQERIENPLAKAILEGQFGAKDKVLVDVEGGRIVFAKGD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 2e-104 43
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 3e-96 41
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 2e-96 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
clpB YP_160835.1 ClpB protein VFG2076 Protein 1e-105 44