|
Name : IL0569 (IL0569) Accession : YP_154959.1 Strain : Idiomarina loihiensis L2TR Genome accession: NC_006512 Putative virulence/resistance : Virulence Product : epimerase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 603028 - 604932 bp Length : 1905 bp Strand : + Note : - DNA sequence : ATGCAGTTACCGCGTAATGTTAAGCGCGGTATTGGCCTGGGCGTCGATATCTTGTCGATTGCTATTGCCATGGTGTTTTC GTACTTATTAAGTTTTGAAGCGGTAATGCCGTTGCGGGTGTCGCAGTGGTTATTGCTGGGGGCTATAGTCCTTTGCGTAA CCTTGCTGGTGTTTATCCGCATGGGTTTGTACCGCGCAGTGGTGCGTTACGTTGGTTTTAAGGTACTGAGCCTGGTCTTT TTTACCGTGTTATTAAGCGGTGCCTTATTGGTGCTGGGTGCTTTATGGATGGGCATTGCTTTGCCGGTAACCGCCGTTGT TAACTATGTGCTGGTAGCCTTTTTATTGACTGGAGGCAGCCGTTTAATTGTGCGTGAAGGCTACCAGCGCGCTATGAGTC GCCAAAAAGACCGGGTGATGATTTATGGTGCAGGCTCTGCCGGACGGCAGTTAGCGCAGGCGCTGGCTAATGGTGACGAA TTTCACCCGGTAATGTTTATTGACGACGATTCGGGTTTGCAGAATACCTCGGTACTGGGGCTAAAAGTAACCGGCCCCGA GGGTATTGCCTGTGCGGTTCGCGAGCTGGATGTTCAGCGCATTTTACTGGCTTTGCCCAGCACGCTGCGCTCGCGCCGTC GCCAAATTCTGGATAGCCTGGAGCAGTTGCCGGTAAAAGTACAAACCGTGCCGGGTATGTCTGACATGGTTAATGGCGAT ATGTCGATTGACCAGCTGCAGGATGTGCGGGTAGAAGACTTGCTAGGGCGTGACCCTGTGACTCCGGCACCGCAGTTAAT GGAAAAGCACATTACCGGACAAACCGTATTGGTTACCGGGGCAGGGGGCTCAATTGGTTCTGAATTGTGCCGCCAAATAT TGCAACAACGCCCCAAGGTACTGGTGCTGTATGAGTTGTCTGAGTTTGCTTTGTACGCCATTGAACGCGAATTAACGCAA ATTTGTCAGCATCAGGGCATTGGCGCGGAAATTATTCCGGTAATAGGTACGGTACAGCGACGCAACCGCATTGAAACCGT GCTGAAGACCTTTGCGGTTGATACCGTATACCACGCCGCCGCCTATAAGCATGTGCCTTTAGTTGAATACAATATGGTAG AGGGCGTGCGCAACAATGTGTTTGGCACCTGGCATACAGCGGAAGCCGCCATTTCTGCCGGTGTTAAGCAGTTCGTGTTA ATTTCCACCGACAAAGCCGTGCGACCCACCAATGTTATGGGCACCACCAAGCGCTTGTCGGAGCTGGTGCTGCAGGGGCT GGCGCAACGGCAGCGCGGAACGCGTTTTTCAATGGTGCGTTTTGGTAATGTACTGGGGTCTTCCGGTTCGGTTGTGCCTT TGTTTAAGGAGCAGATTGAACACGGCGGTCCGGTAACGGTAACGCACCCCGATATTACCCGCTTTTTTATGACCATACCC GAGGCTGCACAGTTAGTGATTCAGGCTGGCACCATGGGGCATTCCGGCTCGGTGTTTGTGCTGGATATGGGCGACTCGGT TAAAATTGTCGATTTAGCCCGCAAGATGATCCGCCTGTCGGGGCTTGAAGAGAAAACCGAGAAGAACCCGCACGGTGACA TTGCTATAGAGTTTAGTGGCTTGCGGCCGGGCGAGAAGTTATACGAAGAACTGTTAATTGGTGACAATGTAGAAGCCAGT GACCACCCGCGTATATTGCGTGCCAATGAGCAGTCGCTAAGCTGGGACGAAATGGAGAAACTGCTGGGGCTGTTGGATGA CGCCTGCCAGCGGTTTGCCATTGACGAGCTGCGCCAGTTATTGCTGGACGCTCCAACCGGCTACGCCCCGCTGGACGACC ATATTTGTGATGTTATTTGGAATAAACACCGCACCTGTAGTGATGATGAAACCGACGTTGCCTGA Protein sequence : MQLPRNVKRGIGLGVDILSIAIAMVFSYLLSFEAVMPLRVSQWLLLGAIVLCVTLLVFIRMGLYRAVVRYVGFKVLSLVF FTVLLSGALLVLGALWMGIALPVTAVVNYVLVAFLLTGGSRLIVREGYQRAMSRQKDRVMIYGAGSAGRQLAQALANGDE FHPVMFIDDDSGLQNTSVLGLKVTGPEGIACAVRELDVQRILLALPSTLRSRRRQILDSLEQLPVKVQTVPGMSDMVNGD MSIDQLQDVRVEDLLGRDPVTPAPQLMEKHITGQTVLVTGAGGSIGSELCRQILQQRPKVLVLYELSEFALYAIERELTQ ICQHQGIGAEIIPVIGTVQRRNRIETVLKTFAVDTVYHAAAYKHVPLVEYNMVEGVRNNVFGTWHTAEAAISAGVKQFVL ISTDKAVRPTNVMGTTKRLSELVLQGLAQRQRGTRFSMVRFGNVLGSSGSVVPLFKEQIEHGGPVTVTHPDITRFFMTIP EAAQLVIQAGTMGHSGSVFVLDMGDSVKIVDLARKMIRLSGLEEKTEKNPHGDIAIEFSGLRPGEKLYEELLIGDNVEAS DHPRILRANEQSLSWDEMEKLLGLLDDACQRFAIDELRQLLLDAPTGYAPLDDHICDVIWNKHRTCSDDETDVA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 7e-88 | 44 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 3e-85 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| IL0569 | YP_154959.1 | epimerase | VFG0029 | Protein | 7e-115 | 55 |
| IL0569 | YP_154959.1 | epimerase | VFG1300 | Protein | 4e-85 | 45 |
