Gene Information

Name : metB (IL0219)
Accession : YP_154611.1
Strain : Idiomarina loihiensis L2TR
Genome accession: NC_006512
Putative virulence/resistance : Resistance
Product : cystathionine gamma-synthase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : -
Position : 240136 - 241308 bp
Length : 1173 bp
Strand : +
Note : -

DNA sequence :
ATGGCAAATGAAAAAACGATGAAATTCGCGACGCGCGCCATTCACGGCGGGCAGTCTCCGGAGCCTGTTACCGGTGCGGT
AATGCCTCCTATTTTTACCAGCTCTACCTATGCTCAGGAAAGCCCGGGCCAACACAAAGGTTTTGAGTATTCACGCTCAC
ACAACCCCACGCGTTTTGCCTGGGAACGTTCGGTTGCATCGCTGGAAGGTGGCAAGCAAGGGCTGGCTTTTGCGTCTGGC
ATGGCAGCAACCTCGACCATTCTTGAACTGCTGGACAGCGGCGATCACATCGTTGCTATGGACGATTTATACGGCGGTAG
CTTCCGCTTATTCGATAAAGTGCGCGGACGCTCTGCTGGCCTGAAATTCTCTTATGTCGACTTAGCTGACTTAAGCGCAG
TGGAAGCCAGCATTCAGGACAACACCCGCATGATTTGGGTCGAGACGCCAAGCAACCCGATGCTGAAACTGGTCGACATT
GAAGCCATCGTTAAACTGGCGAAGAAAAAGAACCCGGACATTATTGTGGTGGTGGACAACACCTTCGCTACGCCGTTTAA
CCAGCGTCCGCTGGAGATGGGCGCAGACATGGTTATGCATTCGGCAACCAAATACCTCAATGGTCACTCTGATATGGTCG
GCGGTATTGCTGTTGTGGGCGACAATGACGACCTGGTTGAGCGTATGCTGTTCTTACAGAACTCAGCAGGTGCTATTGCC
GGTCCGTTTGACTCATACCTGGCACTGCGCGGCGTGAAGACGTTGGCATTGCGTATGCGTCATCACAACGAAGCGGCAAT
GGAATTAGCTAAGTGGCTTGAGCAACACCCGAAAGTGGAAAAAGTCATTTACCCGGGACTTGAAAGCCATCCTCAGCACG
AGTTGGCTAAAAAGCAGATGCAGGGCTTTGGCGGCATGATTTCTATTTTACTGAAAGGTGATTTAGAAGCGGCGCGCAAA
TTCCTGGAGTCGGTAGAAGTGTTTGCTCTGGCGGAAAGCCTGGGCGGCGTTGAATCGCTGATTGAGCACCCGGCTATTAT
GACTCACGCATCGGTTCCAAAAGAGAATCGTGAGAAGTTAGGCATTCTGGATAACTTCGTGCGGGTGTCTGTTGGTATTG
AAGATCTGGATGATCTTAAAGCCGACTTAGACAACGCGCTTAATGCATTTTAA

Protein sequence :
MANEKTMKFATRAIHGGQSPEPVTGAVMPPIFTSSTYAQESPGQHKGFEYSRSHNPTRFAWERSVASLEGGKQGLAFASG
MAATSTILELLDSGDHIVAMDDLYGGSFRLFDKVRGRSAGLKFSYVDLADLSAVEASIQDNTRMIWVETPSNPMLKLVDI
EAIVKLAKKKNPDIIVVVDNTFATPFNQRPLEMGADMVMHSATKYLNGHSDMVGGIAVVGDNDDLVERMLFLQNSAGAIA
GPFDSYLALRGVKTLALRMRHHNEAAMELAKWLEQHPKVEKVIYPGLESHPQHELAKKQMQGFGGMISILLKGDLEAARK
FLESVEVFALAESLGGVESLIEHPAIMTHASVPKENREKLGILDNFVRVSVGIEDLDDLKADLDNALNAF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 3e-78 48
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 2e-79 48
metB YP_281510.1 cystathionine beta-lyase Not tested Not named Protein 3e-56 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
metB YP_154611.1 cystathionine gamma-synthase BAC0207 Protein 4e-70 45