Gene Information

Name : dnaB (IL1933)
Accession : YP_156314.1
Strain : Idiomarina loihiensis L2TR
Genome accession: NC_006512
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 2060012 - 2061406 bp
Length : 1395 bp
Strand : -
Note : -

DNA sequence :
ATGGCAGAGAAGTCAAAAAAACGCGACGCGTCAATAGAAGCACTGCGCTCGGCACCACATTCAATTGAAGCTGAACAATC
CGTTCTTGGCGGTTTAATGCTCGATAATGATGCCTGGGACAATGTTGCCGGTAGCGTCATCGCTGAAGACTTCTATCATC
GTTCGCATAGGCTTATTTTTAAAGCCATGCATGAGCTTGCTCAACGCAGTCAGCCAATGGATTTGGTGACAGTTTCCGAA
AACTTGGAAACGGCTGGGGAGCTTGAGCAAATAGGTGGTTTTGCCTACCTTGGAGAAATTGCGAAAAACACCCCCAGCGC
GGCAAATATATTAGCCTATGCAAACATTGTCCGCGAACGAGCGGTGTTAAGGGAAATGATTGGTGCGGCAAATGATATTG
CTGAGTCAGGTTACGATACTCAGGGGCGAAGCAGCGCCGAATTGCTTGATCTGGCGGAATCAAAAGTCTTTCAAATTGCT
GAGAAGCGAGTCAGTTCCAGCGAAGGGCCGCAAGGTATCAATTTAATTCTGCAGCGTACGGTTAGCCGTATTGAGCAGTT
GAGTAAGCTGAAAAACAATAACGGCGTGACCGGTGTTTCTACCGGCTTTACTGACCTCGATCAGATGACTGCTGGTCTTC
AGCCTTCTGACCTGGTCATTGTAGCGGCACGTCCGTCTATGGGGAAAACGACCTTTGCCATGAATCTGGCAGAGAATATT
GCGCTCAATGATGACCGTCCGGTATTGGTGTTTAGTTTGGAAATGCCCGCAGAGCAGCTGATGATGCGTATGCTGGCGTC
ACTTAGTCGGGTAGATCAGAATAAAGTACGTACCGGTAAGCTTGAAGATGACGACTGGGCTCGCATCGCGTCTGTCATGA
ACATGCTAAATGATAAAAATAATATCTACATAGACGACTCATCTGGCTTAACTCCTACCGAAGTGCGCTCCCGTGCTCGC
CGGATTCATAGAGAGCATAAGGGAATATCCATGATTATGGTGGATTATCTGCAGCTAATGACGGTTCCGGGCATGTCGGA
AAACCGAACGCTGGAAATTGCAGAGATATCTCGTTCTTTGAAGTCGTTAGCGAAAGAGCTGGAAGTGCCTGTGGTGGCGC
TGTCTCAGTTAAACCGTTCACTTGAGCAGCGTTCCGATAAAAGACCCGTTAACTCAGACTTGCGTGAGTCTGGCTCTATT
GAGCAGGATGCTGATGTTATTATGTTTATTTACCGTGACGAAGTTTACCACCCAGACTCAGCTGAACAGGGCTTAGCTGA
AATCATTATCGGCAAACAGCGTAATGGGCCTATTGGTAAAATTGAATTGAAATTCCATGGGCAATTATCGAGGTTTGACA
ACTATGCCCGCCATGCCAGCGACGAGCGTTATTAG

Protein sequence :
MAEKSKKRDASIEALRSAPHSIEAEQSVLGGLMLDNDAWDNVAGSVIAEDFYHRSHRLIFKAMHELAQRSQPMDLVTVSE
NLETAGELEQIGGFAYLGEIAKNTPSAANILAYANIVRERAVLREMIGAANDIAESGYDTQGRSSAELLDLAESKVFQIA
EKRVSSSEGPQGINLILQRTVSRIEQLSKLKNNNGVTGVSTGFTDLDQMTAGLQPSDLVIVAARPSMGKTTFAMNLAENI
ALNDDRPVLVFSLEMPAEQLMMRMLASLSRVDQNKVRTGKLEDDDWARIASVMNMLNDKNNIYIDDSSGLTPTEVRSRAR
RIHREHKGISMIMVDYLQLMTVPGMSENRTLEIAEISRSLKSLAKELEVPVVALSQLNRSLEQRSDKRPVNSDLRESGSI
EQDADVIMFIYRDEVYHPDSAEQGLAEIIIGKQRNGPIGKIELKFHGQLSRFDNYARHASDERY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 1e-104 52
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 3e-99 50
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 4e-102 49
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 1e-101 49
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 1e-100 48
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 6e-88 47
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 1e-90 47
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 1e-90 47
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 4e-78 45