Gene Information

Name : intA (IL1654)
Accession : YP_156036.1
Strain : Idiomarina loihiensis L2TR
Genome accession: NC_006512
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1769445 - 1770662 bp
Length : 1218 bp
Strand : -
Note : -

DNA sequence : 
ATGCCACGGCCTGTGACTCCGCTTAACGACAGTCAAATAAAAAAAGCTAAGCCAAAGGAAAAAGACTGTGTTTTTTCTGA
TGGTGGGGGGCTTCAGTTGCGCATTAGAGCTTCCAGTGGTTCAAAGTTATGGAATTTTAATTACCTGCATCCAGTTACAA
AGAAACGTATGAATATGGGGTTGGGGATGTACCCTGAGGTTAGCCTAAAAAAGGCCAGAAGCTTAGCGGAAGAGGCTCGG
GCAAAAGTTGCTGAAGGCATAGACCCTAAGCTTTCTAGAGATGAAAGTATTCGGACTCAGCGAACTGAGCAAGAGTCGAC
TTTACGTAAAGTTGCTGAAGATTGGTTTGAAACTAAGAAAACCAAAGTCACGGATGATTATGCGGATGACATTTGGCGAT
CACTAGAGCTTCATGTATTCCCAGACTTAGGCAAAAAGCCGATAAATGAAATTACTGCGCCGATGTTTATCCAGGTACTT
AAACCGATAGAAAAGTCGGGGCGCTTGGAAACTGTGAAGCGTGTTATTCAACGTGTTAATGAAATCATGGTCTTCGCCAC
GAATACTGGTGTTATCCAGGCTAATCCCCTAGCTGGAGTGAAAGCAGCTTTTCAGTCGCCCAAAAAGCAGCATTTACCAA
CAATAGGAAAGGATGAACTACCGGTATTCTTGGATAAACTCCAAAACACTAGCGTCAGTAAGGTTACTAGGCATTTAATT
AAATGGCAGTTACTTACGATGGTTCGGCCATCTGAAGCTGCTGGCGCTAGGTGGGAAGAAATTGAAAGGTTAGATAACGG
TGAGGTTAATTGGATTATACCGGCTGAACGAATGAAAAAGCGACGTCAGCACATTGTTCCTCTACCGACGCAAGCCATAA
AAGTGCTGGATAAAATGAAAGAGATTAGCGGTAACAGAGAGCATATTTTCATTTCAATGAAGAACCCTAACACGCATGTA
AACAGTCAAACTGCGAATATGGCGATACGACGCATGGATTATAAAGATAAGCTCGTTAGCCACGGTTTAAGAGCTTTGGC
GAGTACTATTCTAAATGAAGAAGGGAAGGATCCTGATCTGATTGAATCTGCGTTGGCGCATACTGATCCTAACCAGATAC
GCAGTGCTTACAATAGATCTCAGTATTTGGAACGCCGTCGGGAATTGATGCAGTGGTGGGGGGACTATCTTGATAATGCC
GTCCGCGCGGGCATATGA

Protein sequence : 
MPRPVTPLNDSQIKKAKPKEKDCVFSDGGGLQLRIRASSGSKLWNFNYLHPVTKKRMNMGLGMYPEVSLKKARSLAEEAR
AKVAEGIDPKLSRDESIRTQRTEQESTLRKVAEDWFETKKTKVTDDYADDIWRSLELHVFPDLGKKPINEITAPMFIQVL
KPIEKSGRLETVKRVIQRVNEIMVFATNTGVIQANPLAGVKAAFQSPKKQHLPTIGKDELPVFLDKLQNTSVSKVTRHLI
KWQLLTMVRPSEAAGARWEEIERLDNGEVNWIIPAERMKKRRQHIVPLPTQAIKVLDKMKEISGNREHIFISMKNPNTHV
NSQTANMAIRRMDYKDKLVSHGLRALASTILNEEGKDPDLIESALAHTDPNQIRSAYNRSQYLERRRELMQWWGDYLDNA
VRAGI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAA82714.1 integrase Not tested VPI Protein 4e-107 53
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 5e-107 53
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 5e-107 53
int AAK20773.1 integrase Not tested VPI Protein 4e-107 53
int AAK20803.1 integrase Not tested VPI Protein 4e-107 53
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 4e-91 49
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 4e-91 49
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 8e-91 49
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 1e-93 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
intA YP_156036.1 integrase VFG1092 Protein 2e-91 49