|
Name : clpB (IL1181) Accession : YP_155570.1 Strain : Idiomarina loihiensis L2TR Genome accession: NC_006512 Putative virulence/resistance : Virulence Product : ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1269520 - 1272093 bp Length : 2574 bp Strand : - Note : - DNA sequence : ATGCGACACGATAAATTTACCAGTAAGTTTCAGATGGCAATTGCCGATGCTCAGTCAATTGCTCTGGGACGTGACCATCA ATTCATAGAACCCGTCCATTTAATGCAGGCACTGTTGGATCAAAACGGTGGCTCAGTGCGCCCTTTATTTACCATGCTGG GTGTGGACATTCCCCAGTTCAGAGCGAACTTGTCGAAAGCCCTGGATGCCTTACCTCAGGTTGAGGGCACCGGCGGTGAC GTTCAGTTATCGCAGAACACAGCTCAACTTTTAAACCTGTGCGATAAATACGCGCAAAAAAGAAATGATTCTTATATCTC GTCTGAACTGTTTTTGCTGGCTGCGGCAGAAGACAAAGGCAAGCTGGGCGATATTTTCCGTCAGCAGGGCATAAAACGTG ATGCGTTGGAAAAAGCCATTAACGACATTCGTGATGGCGAAAAAGTGGATGACCCTAATGCCGAAGACAAACGTCAGGCG CTGGACAAGTACACCATTGATTTAACTGAACGTGCGGAGCAGGGCAAGCTTGATCCTGTTATTGGCCGTGATGAAGAAAT TCGCCGGACTATTCAGGTATTGCAGCGCCGTACTAAAAACAACCCGGTACTTATTGGTGACCCCGGTGTCGGTAAAACCG CCATTGTTGAAGGGTTAGCTCAGCGTATTGTTAACGGCGAAGTGCCTGAGGGTTTAAAGCATAAACGAGTATTGTCTCTG GATTTAGGGGCTTTATTAGCGGGAGCTAAATTCCGCGGCGAGTTTGAAGAGCGACTCAAAGCCGTATTGACTGAGCTGTC TAAAGAAGAAGGTCGCATCATTTTGTTTATTGACGAAATGCACACCATGGTCGGTGCTGGTAAAGCGGACGGTGCGATGG ATGCCGGCAACATGTTGAAGCCAGCTCTGGCTCGTGGCGAGCTGCACTGTGTTGGTGCTACTACGCTGGATGAATACCGT CAGTATATTGAAAAAGATGCGGCGCTGGAACGACGCTTCCAGAAAGTTTTGGTGGAAGAGCCAAACGTGGAAGACACCAT TGCTATTTTGCGTGGTTTGAAAGAGCGCTACGAACTGCACCATTCGGTGGAAATTACCGATCCGGCTATTGTGGCCGCGG CGTCTTTATCGCACCGTTATATCAGTGATCGAAAACTGCCGGATAAAGCCATCGACTTAATTGACGAGGCAGCATCAAGT ATTCGTATGCAAATTGACTCTAAGCCAGAGGATCTTGATCGCCTGGAGCGTCGAATTATTCAGTTAAAACTTGAACGTCA GGCGTTGCAGAAAGAAAAAGATGATGCCAGCAAAAAACGCTTGGAAATTCTGCACGACGAGCTGGACGAGCAAGAACGTA AATATGAAGAGCTGGAAGAAGTCTGGAATACAGAAAAAGCGGCAGTACAAGGTACTCAACATATTAAAGCGCAGCTAGAG CAGGCTCGCACGGATATGGATATTGCCCGCCGCGCCGGTGACTTAAACCGGATGTCAGAACTTCAGTATGGCCGGATTCC TGAACTGGAGCGACAACTGGATTTAGCCTTGCAAGCCGAAATGCAGGATATGAGTTTGCTGAAAAACCGGGTTACTGAAG AAGAAATTGCTGATGTACTGTCACGATGGACGGGTATTCCGGTTAACAGAATGCTCGAAGGCGAGCGTGAAAAGCTGTTA CATATGGAAGAGCAAATCCACAGTCGGGTAGTAGGTCAAAATGAGGCCGTAGAAGCGGTTTCAAATGCTATCCGTCGTTC ACGTGCGGGACTAGGTGATCCGAATCGTCCTATTGGTTCATTCTTGTTCCTTGGTCCAACCGGTGTGGGTAAAACTGAGC TCTCTAAAGCCTTGGCGAATTTTATGTTTGATACCGACCATGCAATGGTGCGTATTGATATGTCCGAGTTTATGGAGAAA CATTCGGTTGCCCGTCTGGTTGGTGCGCCTCCTGGCTATGTTGGCTACGAAGAAGGTGGCTATTTAACCGAAGCTGTACG GCGTAAACCGTATTCGGTGATTTTGTTGGACGAAATAGAGAAGGCTCACCCCGATGTCTTTAATATCTTATTACAGGTAT TGGACGATGGCCGCTTAACCGATGGTCAGGGACGTACGGTCGATTTCAAAAATACCGTTATTATCATGACCTCTAACCTA GGTTCTGATTTAATTCAGGAGCATGCCAAAGAGCATACTTATGAGCAGATGAAGGCCGAGGTCATGGAAGTGCTGGCGCA TCATTTCCGTCCTGAATTCATTAACCGTGTGGACGAAACCGTTGTTTTCCATCCTCTTGGGGAAAGTGAAATTAGATCTA TTGCGCAGTTCCAGTTGCAGCTCCTTTATAAGCGCCTGGAAGACAAAGACTATCAGTTAGAACTGGATGATAAGGCTTTA TCTCATCTGGCAAGAACGGGATTTGATCCGGTATTTGGGGCGCGGCCTCTGAAACGTGCTATTCAACACGAGTTGGAGAA TCCTTTAGCGCAAAAAATCTTGTCAGGGGAACTTGAGCCTGCTAAACCGATCAAAGTAAGTGTTGAAAATGAGCGGTTAG TGATCACGCAGTAA Protein sequence : MRHDKFTSKFQMAIADAQSIALGRDHQFIEPVHLMQALLDQNGGSVRPLFTMLGVDIPQFRANLSKALDALPQVEGTGGD VQLSQNTAQLLNLCDKYAQKRNDSYISSELFLLAAAEDKGKLGDIFRQQGIKRDALEKAINDIRDGEKVDDPNAEDKRQA LDKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGDPGVGKTAIVEGLAQRIVNGEVPEGLKHKRVLSL DLGALLAGAKFRGEFEERLKAVLTELSKEEGRIILFIDEMHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR QYIEKDAALERRFQKVLVEEPNVEDTIAILRGLKERYELHHSVEITDPAIVAAASLSHRYISDRKLPDKAIDLIDEAASS IRMQIDSKPEDLDRLERRIIQLKLERQALQKEKDDASKKRLEILHDELDEQERKYEELEEVWNTEKAAVQGTQHIKAQLE QARTDMDIARRAGDLNRMSELQYGRIPELERQLDLALQAEMQDMSLLKNRVTEEEIADVLSRWTGIPVNRMLEGEREKLL HMEEQIHSRVVGQNEAVEAVSNAIRRSRAGLGDPNRPIGSFLFLGPTGVGKTELSKALANFMFDTDHAMVRIDMSEFMEK HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIIMTSNL GSDLIQEHAKEHTYEQMKAEVMEVLAHHFRPEFINRVDETVVFHPLGESEIRSIAQFQLQLLYKRLEDKDYQLELDDKAL SHLARTGFDPVFGARPLKRAIQHELENPLAQKILSGELEPAKPIKVSVENERLVITQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 1e-158 | 45 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 1e-100 | 42 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 4e-99 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 3e-99 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_155570.1 | ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones | VFG2076 | Protein | 5e-110 | 43 |
