Gene Information

Name : bcfC (SPA0023)
Accession : YP_149372.1
Strain : Salmonella enterica ATCC 9150
Genome accession: NC_006511
Putative virulence/resistance : Virulence
Product : fimbrial usher
Function : -
COG functional category : N : Cell motility
COG ID : COG3188
EC number : -
Position : 25796 - 28417 bp
Length : 2622 bp
Strand : +
Note : similar to Salmonella typhimurium fimbrial usher

DNA sequence :
ATGCGTAATCAGCTTTTCATGACGCGATATTACTCCAGCGTAGCTAAACCCGTATTAACTCCGCTGGCGTTGGCTATCGC
ACTGGCGCCTGCGCCTGGGTGGGCGGAAAACTATTTCAACCCGGCATTTCTGTCTGACGACCCGTCTGCGGTGGCCGACT
TATCGACCTTTTCCCGTAATGCCCAGGCGGCGGGAATGTATCGCGTTGACGTTTACCTGAACAATACGTTTCTCGCGACC
AGAGACATTGCCTTCCAGGCGGTGAAGACGACGGGAAAAAGCGCGCCCACCGATGACAGCGGATTACGCGCCTGCCTGAC
GCCTGAAATGCTTAAAAATATGGGGGTAAACACCGGGGCATTTCCACTGTTGGCGAAGGCGGCGGCGGGAAGTTGTCCGG
ATCTCGCCAGTGCGATACCGGCCGCCCGGACCCGCTTTGATTTTGCGCAGCAACGTCTCGACATTAGCATCCCGCAGGCG
GCGATGGTTGCCAGCGCCAGAGGCTATATCCCACCGCAATACTGGGATGAAGGTATTAACGCGTTGCTATTTAATTACAC
CTTTACCGGCGCGAATAGTCAGGATCGGAGCCCTGGCGGCAGTGCGGAGAACAGCTATTTTCTTGGATTGAATAGCGGCC
TTAATCTGGGGGCCTGGCGGTTACGCGACTACTCCACATGGAACGCGAATAGCGGCGATCAGAATAGCGACAGCGACTGG
CAGCACATCAGTACTCATCTGGAACGTGATGTGGTCTTTTTGCAGGGAGAACTGACGGCAGGCGATAGTTATACCCCCTC
CGCATTATTCGACAGCCTTCCTTTTCGCGGACTACAACTGGCGTCTGACGACAATATGTTGCCAGACAGCATGAAGGGCT
TCGCGCCGACCATTCACGGCATTGCCAGAAGCAACGCGCAAGTGACCATTCGGCAAAACGGCTACATCATCAATCAGCGC
TATGTGCCGCCCGGGGCATTTACTATTAATGATCTCTATCCTACCGCCGCCAGCGGTGATTTGACTGTGGAAGTCAAAGA
GTCCGACGGTTCTATTAATCGCTATAACGTGCCCTATTCCGCCGTGCCGATTCTACAACGAGAAGGGCGGCTGAAGTATG
CGGCGACGGTGGCGGAGTATCGCAGCGATAGTAGTCAAAAAGAGAAGGTGAAATTCAGTCAGGCGACCTTGATATGGGGG
TTACCGCATGGTTTTACGCTGTATGGCGGAACACAACTTTCCAGTCATTATCACGCGCTGGCGATCGGCAGCGGCGCAAA
TCTGGGCGACTGGGGCGCGGTGTCGCTGGATGTCACCCAGGCTACCAGTACGCTGGCGGATAATAACACCTACCAGGGGC
AATCGCTGCGTTTCCTGTATGCCAAATCGCTTGCACAGTCAGGAACCAATTTACAGCTTATGGGTTATCGCTATTCAACC
TCGGGCTTTTATACGCTGGATGATACCACGTGGAAACGGATGAGCGGCTATGACGATGACAATCGGACTGACAGCGATAA
AAGCAGGCCGGAATGGGCGGATTATTACAATCTTTATTATACCAGGAGGGGCAAAGTACAACTCGATATCAATCAACAGC
TAGGCGGGTTGGGATCGCTTTTTATTACCGGCAGTCAGCAAAGTTACTGGCACACTGATGAAAAGGATTCTTTGTTGCAG
GTGGGATACAGCGATACGCTGGCGGGTATTGCATGGAGCGTTTCTTACAACAATAACAAATCCGCAGGCGATGCGGAGCG
CGATCAAATTTTCGCCCTGAATATCTCGGTGCCGCTAAGTCAATGGCTGCAACATGATGATGAGGTCACGCACCATCACA
ATGTTTACGCTACCTTTAGCACCAGTACGGACAAACAGCATAACGTTACGCAGAATGCGGGCCTTAGCGGCACACTACTG
GACGAAAACAATCTTAGTTACAACATACAGCAAGGCTATCAGAATCACGGTATTGGCGAAAGCGGCGCCGCCAGCCTGGA
ATACGATGGGGCGAAAGGCAACGCCAATATTGGCTATAACGTTAGCGATAACGGCGATTACCAGCAGGTGAATTATGGCC
TGAGCGGCGGCCTGGTGGCGCACGCGCATGGAGTGACGCTAAGCCAGCCGTTAGGCAATACCAATATTTTGATTGCCGCG
CCGGGCGCAGCCAATGTCGGCGTTGTCGACCAGCCGGGTATTCATACGGACGCGCGTGGCTATGCGGTGGTGCCGTATGC
GACGACATATCGCCAAAACCGTATGGCGCTGGACGTTAACGCCATGGCTGATGATGTCGATATTGATGACGCGGTGACTC
GCGTTGTGCCGACCGAAGGCGCGCTGGTTCTGGCCCGCTTTAAAGCGCGAGTCGGCGTGCGTGCCCTGGTAACGCTGAAT
CATAATGGTAAGCCTGTACCCTTTGGCGCAACGGTGACGGTGAATGATCGCCATGCGGAGGCGATTGTTGACGAGGCCGG
GGAGGTCTATCTTTCCGGGTTGTCAGCGCAAGGCGTTCTGCACGTTCGCTGGGGGAACCTGCCGGATCAACAGTGCGTCG
CGTCCTATCATCTCTCTTCCTCCCGTCAGATTCTGAGTCGACAACATGCGGAGTGTCATTAA

Protein sequence :
MRNQLFMTRYYSSVAKPVLTPLALAIALAPAPGWAENYFNPAFLSDDPSAVADLSTFSRNAQAAGMYRVDVYLNNTFLAT
RDIAFQAVKTTGKSAPTDDSGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTRFDFAQQRLDISIPQA
AMVASARGYIPPQYWDEGINALLFNYTFTGANSQDRSPGGSAENSYFLGLNSGLNLGAWRLRDYSTWNANSGDQNSDSDW
QHISTHLERDVVFLQGELTAGDSYTPSALFDSLPFRGLQLASDDNMLPDSMKGFAPTIHGIARSNAQVTIRQNGYIINQR
YVPPGAFTINDLYPTAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSDSSQKEKVKFSQATLIWG
LPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNTYQGQSLRFLYAKSLAQSGTNLQLMGYRYST
SGFYTLDDTTWKRMSGYDDDNRTDSDKSRPEWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGSQQSYWHTDEKDSLLQ
VGYSDTLAGIAWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHDDEVTHHHNVYATFSTSTDKQHNVTQNAGLSGTLL
DENNLSYNIQQGYQNHGIGESGAASLEYDGAKGNANIGYNVSDNGDYQQVNYGLSGGLVAHAHGVTLSQPLGNTNILIAA
PGAANVGVVDQPGIHTDARGYAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLARFKARVGVRALVTLN
HNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGVLHVRWGNLPDQQCVASYHLSSSRQILSRQHAECH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 0.0 51
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 0.0 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
bcfC YP_149372.1 fimbrial usher VFG0876 Protein 0.0 52
bcfC YP_149372.1 fimbrial usher VFG0446 Protein 0.0 50
bcfC YP_149372.1 fimbrial usher VFG1645 Protein 0.0 50
bcfC YP_149372.1 fimbrial usher VFG0912 Protein 0.0 50
bcfC YP_149372.1 fimbrial usher VFG0454 Protein 6e-165 43