Gene Information

Name : fimC (SPA2180)
Accession : YP_151381.1
Strain : Salmonella enterica ATCC 9150
Genome accession: NC_006511
Putative virulence/resistance : Virulence
Product : fimbrial chaperone protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 2268549 - 2269241 bp
Length : 693 bp
Strand : -
Note : similar to Salmonella typhi CT18 fimbrial chaperone protein

DNA sequence : 
ATGCTGAATAGTATAAAAGTAGGCTTTATTGTTCTTCTCACGTTATTTACTTCGCTGAACGTACAGGCGGCGGGGGGGAT
TGCATTAGGCGCCACGCGAGTTATTTATCCCTCGGCGGCGAAGCAGACTTCTCTGGCAATCAGTAATAGCGATACTCAAG
AACGTTACCTCGTCAATTCATGGATCGAAAATAGCGCCGGGCAGAAAGAAAAAACGTTTATTGTTACGCCGCCTTTATTC
GTCAGCGAACCCAAAAGCGAAAACACGCTGCGTATTATCTACGCCGGGCAACCGCTACCCGCGGATCGGGAGTCGTTATT
CTGGATGAACGTGAAAGCCATCCCGTCGGTCGATAAAAGTCATATTGAAGGAAAAAACGTTCTGCAACTGGCGATTCTGT
CGCGCATCAAACTGTTCGTGCGTCCGGCGAATTTGCCGCAGACGCCGGAAGACGCGCCGACCTTGCTGAAATTTTCCCGT
GTCGGCAACCATCTCAAGATAACCAACCCATCTGCTTATTACCTCACGCTGGTCAATATCAGCGTGGGCGCGAAAAAGAT
TGATAACGTGATGATCGCGCCAAAAAGCGACATGCAAATTCCCTTACCGACTGGCGCGCAGGGCAGCGTGACATTTCAGA
CCGTCAATGATTACGGCGCATTGACGTCGTCGACAACGGCCAGTCTCGGTTAA

Protein sequence : 
MLNSIKVGFIVLLTLFTSLNVQAAGGIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIENSAGQKEKTFIVTPPLF
VSEPKSENTLRIIYAGQPLPADRESLFWMNVKAIPSVDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSR
VGNHLKITNPSAYYLTLVNISVGAKKIDNVMIAPKSDMQIPLPTGAQGSVTFQTVNDYGALTSSTTASLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 2e-48 51
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 3e-52 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fimC YP_151381.1 fimbrial chaperone protein VFG0445 Protein 1e-103 98
fimC YP_151381.1 fimbrial chaperone protein VFG1644 Protein 1e-48 51
fimC YP_151381.1 fimbrial chaperone protein VFG0911 Protein 1e-48 50
fimC YP_151381.1 fimbrial chaperone protein VFG0875 Protein 1e-53 48
fimC YP_151381.1 fimbrial chaperone protein VFG0455 Protein 7e-41 42