Gene Information

Name : ybdN (SPA2129)
Accession : YP_151333.1
Strain : Salmonella enterica ATCC 9150
Genome accession: NC_006511
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG3969
EC number : -
Position : 2214615 - 2215850 bp
Length : 1236 bp
Strand : +
Note : similar to Salmonella typhi CT18 conserved hypothetical protein

DNA sequence : 
ATGTCGGTTTATAAAGTTCCGCTTGAGCAAAATGTTCTGGAAGCGGCTCAAGAGCGTATAACATGGCCCCTGGAAACTTT
ACCCCGGGTCTGCGTCTCATTTTCTGGTGGTAAAGATTCAGGACTTATGCTGCACCTGACGGCAACGTTGGCGCGCAAAA
TGAATAAAAAGATCCACGTTCTTTTCATTGACTGGGAAGCGCAATTCTCCTGTACTATCGCTTATATTGAATCGTTACGT
GAATACTACGCGGACGTTATTGAGCGTTTTTATTGGGTCGCATTACCCTTAACCACACAAAATTCCCTTTCACAATACCA
GCCGGAGTGGCAGTGTTGGCAGCCGGGAACCGACTGGGTACGACAACCGCCAGAAGATGCGATTACCGATCCGGCCTTTT
TTTCCTTTTATCAACACGGCATGACTTTTGAACAGTTCGTTCGCGATTTTGCCGACTGGTCTTCAGAAAAGCGCCCTGCC
GCTATGCTGGTCGGTATTCGTTCCGACGAATCCTATAACCGGTTTGTCGCTATCGCTAACTCGCATAAGCTGCGCTTTGC
CGACGATAAGCCCTGGACCACGTTGGCCCCCAAGGGGCACACCTGGTATATCTACCCCATCTATGACTGGAAAACCGCAG
ATATCTGGACCTGGTTCGCCAAAACAGGTAAATCATGTAACCCCTTGTATAATTTGATGTATCAGGCTGGCGTACCGGTC
CGTTACATGCGTATTTGCGAACCATTCGGCCCGGAACAACGGCAGGGGTTATGGCTGTATCATGTTATCGAACCTGAGCG
CTGGGCGGCCATGTGCGCCAGAGTCAGCGGCGTACTCAGCGGAGGAATATACGCCGGGCAGGACAGCCATTTTTACGGCC
ACCGGAAAATTTTAAAACCCGATCACCTTAACTGGGAAGAGTACGCGCTGCTCCTGCTACACAGTATGCCTGAAGTCACT
GCCGAACATTACCGTAATAAAATCGCCGTTTATTTGCAGTGGTATAAGAAAAAAGGCATGAACACCATTCCACAGACGCA
GCAGGGCGATATCGGATCGCGGGATATTCCGTCATGGCGACGGATCTGCAAAGTATTACTGAACAATGATTACTGGTGCC
GGGCGCTGTCATTCAGTCCGACAAAACCTAAGAGTTACCAGCGTTATAACGAACGCATGAAAGCTAAACGCCAGGAATGG
GGGATCTTATGCAACACCGACTCACAACCGAAATAA

Protein sequence : 
MSVYKVPLEQNVLEAAQERITWPLETLPRVCVSFSGGKDSGLMLHLTATLARKMNKKIHVLFIDWEAQFSCTIAYIESLR
EYYADVIERFYWVALPLTTQNSLSQYQPEWQCWQPGTDWVRQPPEDAITDPAFFSFYQHGMTFEQFVRDFADWSSEKRPA
AMLVGIRSDESYNRFVAIANSHKLRFADDKPWTTLAPKGHTWYIYPIYDWKTADIWTWFAKTGKSCNPLYNLMYQAGVPV
RYMRICEPFGPEQRQGLWLYHVIEPERWAAMCARVSGVLSGGIYAGQDSHFYGHRKILKPDHLNWEEYALLLLHSMPEVT
AEHYRNKIAVYLQWYKKKGMNTIPQTQQGDIGSRDIPSWRRICKVLLNNDYWCRALSFSPTKPKSYQRYNERMKAKRQEW
GILCNTDSQPK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
z1203 CAD33763.1 Z1203 protein Not tested PAI I 536 Protein 1e-123 60
ibrA ADD91735.1 putative phosphoadenosine phosphosulfate reductase IbrA Not tested PAI-I AL862 Protein 4e-124 60
Z1643 AAQ19139.1 putative phosphoadenosine phosphosulfate reductase Not tested PAI I CL3 Protein 2e-124 60
Z1203 NP_286738.1 hypothetical protein Not tested TAI Protein 5e-124 60
ORF_31 AAZ04441.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 2e-125 60
Z1643 NP_287146.1 hypothetical protein Not tested TAI Protein 5e-124 60
APECO1_3502 YP_854308.1 hypothetical protein Not tested PAI I APEC-O1 Protein 3e-125 60
c5209 NP_757057.1 hypothetical protein Not tested PAI II CFT073 Protein 3e-125 60
STY4583 NP_458667.1 conserved hypothetical protein Not tested SPI-7 Protein 3e-125 58
t4277 NP_807875.1 hypothetical protein Not tested SPI-7 Protein 3e-125 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ybdN YP_151333.1 hypothetical protein VFG1504 Protein 6e-124 60