Gene Information

Name : copR (SPA1754)
Accession : YP_150985.1
Strain : Salmonella enterica ATCC 9150
Genome accession: NC_006511
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1814007 - 1814687 bp
Length : 681 bp
Strand : +
Note : similar to Salmonella typhi CT18 response regulator

DNA sequence : 
ATGAAGATTTTATTGATTGAAGATAACCAGAAAACCATTGAGTGGGTACGTCAGGGACTCACGGAGGCAGGCTATATGGT
TGATTATGCCTGTGATGGACGAGACGGATTACACCTGGCCCTTCAGGAACATTATTCATTGATTATTCTTGATATTATGC
TGCCGGGGCTTGATGGATGGCAGGTTTTACGCGCGTTACGCACTGCGCATCAGTCCCCTGTTATTTGCCTGACGGCGCGC
GACTCGGTTGAGGATCGCGTCAAAGGTCTTGAGGCGGGCGCTAATGATTACCTTGTTAAGCCTTTTTCCTTCGCCGAACT
GCTGGCCCGGGTGAGAGCTCAACTCAGACAGCACGTCCCGGTCTTTACCCGACTGACGATCAATGGTCTGGACATGGATG
CCACAAAGCAATCGGTGTCACGAAATGGCAAACCGATTTCCCTGACCCGCAAAGAATTCCTGCTCCTCTGGTTACTGGCG
TCCCGGGCAGGAGAAATCGTGCCCCGAACCGCGATCGCCAGCGAAGTTTGGGGAATTAACTTTGATAGTGAAACCAACAC
CGTTGATGTCGCGATTCGTCGGCTGCGCGCCAAAGTAGACGATCCATTTGAAAAGAAGCTCATTATGACCGTCCGGGGGA
TGGGTTACCGATTACAGGCGGAAACGTCGCAGAATGGTTAA

Protein sequence : 
MKILLIEDNQKTIEWVRQGLTEAGYMVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQVLRALRTAHQSPVICLTAR
DSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLA
SRAGEIVPRTAIASEVWGINFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRLQAETSQNG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-103 99
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-102 98

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_150985.1 response regulator BAC0083 Protein 5e-56 58
copR YP_150985.1 response regulator BAC0197 Protein 4e-59 58
copR YP_150985.1 response regulator BAC0125 Protein 2e-59 56
copR YP_150985.1 response regulator BAC0638 Protein 2e-52 56
copR YP_150985.1 response regulator BAC0308 Protein 2e-54 55
copR YP_150985.1 response regulator BAC0111 Protein 1e-56 53
copR YP_150985.1 response regulator BAC0347 Protein 6e-50 52
copR YP_150985.1 response regulator NC_010079.5776364.p0 Protein 1e-39 45
copR YP_150985.1 response regulator NC_002952.2859858.p0 Protein 1e-39 45
copR YP_150985.1 response regulator NC_007622.3794948.p0 Protein 1e-39 45
copR YP_150985.1 response regulator AE015929.1.gene1106. Protein 1e-33 45
copR YP_150985.1 response regulator NC_003923.1003417.p0 Protein 1e-39 45
copR YP_150985.1 response regulator NC_013450.8614146.p0 Protein 1e-39 45
copR YP_150985.1 response regulator NC_002951.3238224.p0 Protein 1e-39 45
copR YP_150985.1 response regulator NC_007793.3914065.p0 Protein 1e-39 45
copR YP_150985.1 response regulator NC_002758.1121390.p0 Protein 1e-39 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_150985.1 response regulator VFG0596 Protein 2e-103 99
copR YP_150985.1 response regulator VFG0473 Protein 2e-29 42
copR YP_150985.1 response regulator VFG1389 Protein 4e-32 42
copR YP_150985.1 response regulator VFG1390 Protein 1e-37 41