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Name : hofB (SPA0147) Accession : YP_149492.1 Strain : Salmonella enterica ATCC 9150 Genome accession: NC_006511 Putative virulence/resistance : Virulence Product : protein transport protein HofB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 169549 - 170934 bp Length : 1386 bp Strand : - Note : similar to Salmonella typhi CT18 protein transport protein HofB DNA sequence : ATGAAAGACGCTCAGCTCAACACCTTGTGTCAACGTCATCAGGCTGTACTGATCAATAGCGCCAGCAACAGTATCACTGT TGCAGTGGTCGACGCGCCCTCTCATGCGTTACTGGACGCTCTGCATTTCGCCACGCAAAAACAGATTGATATTGTGTGCT GGACTCGCCAGCAAATGGAAAATCATCGGCATAAGCCGGATCAGGCTCCCTCGGCAAACGCCGCGAAAGGCGGAGAAACC GCGGCCCAGCTTCTCAATCAGACATTACGCTCGGCGATGGCGAAACGCGCCTCTGATATCCATCTCGAACCAGGCGCCAG CCGCTACCGAATAAGACTCCGCATCGACGGCGTTCTTCATATTCTGCAGGACATCGCCAAAGAGACGGGGCTTGCGCTGA CGGCCAGATTGAAAGTCCTGGGAAATTTGGACATCGCTGAACATCGACTGCCGCAGGACGGGCAATTTACCGTTGACCTG ACGGGCGACAGCATCTCTTTTCGTATCGCCACGCTTCCCTGTAAAGAAGGCGAAAAAGTCGTCTTACGGTTGTTGCATCA GGTTGAACAAACGCTGGATCTGAACACGCTGGGCATGTACGGGGCACAACTTACCGCTTTTAGACAAGCCCTACAGCAAC CTCAAGGGCTGGTACTGGTGACTGGCCCCACCGGTAGCGGAAAAACGGTCACGCTATACAGCGCGCTACAAACCCGGAAT ACGCCGGGTATCAACCTCTGTAGCGTTGAGGATCCGATAGAAATTCCACTGGATGGGATTAACCAGACGCAGATCCATCC CCGCGCCGGGCTCACCTTTCAAAATGTGCTGCGCGCGCTTTTACGCCAGGACCCTGACATCATCATGGTAGGTGAAATTC GTGACGGCGACACCGCAGAAATCGCCATTAAGGCGGCACAAACGGGCCATCTGGTACTTTCAACGCTCCATACGAACTCC ACCAGCGAAACCCTGATACGTTTGCAGCAAATGGGCGTAGCACGCTGGATGATCTCATCGGCGCTTACGCTGGTGGTAGC GCAACGCCTGGTAAGAAAGCTTTGCCCGCACTGCAAACAGCGCCTGAACGATCCCGTGGTACTATCGCCCAATCTTTGGC CCAGCGCGCTGCCGCGCTGGCAGGCAAGCGGCTGTCAGCATTGCTACCACGGCTTTTATGGCCGAACCGCGTTATTCGAA GTGTTAACCGTTACCCCGGCATTACGTCAGTTAATTGCGAGCGGCGCATCGGCGCAAGCACTGGAAGCCCACCTCCAGCA GACCGGTACAGAGACGCTTTTTGAAAATGGCTGTCGCGCCGTTGAGCAAGGCATGACGTCCTTTGAAGAGATACTGCGCG TTCTGGGAATGCCCCATGAGCGTTAA Protein sequence : MKDAQLNTLCQRHQAVLINSASNSITVAVVDAPSHALLDALHFATQKQIDIVCWTRQQMENHRHKPDQAPSANAAKGGET AAQLLNQTLRSAMAKRASDIHLEPGASRYRIRLRIDGVLHILQDIAKETGLALTARLKVLGNLDIAEHRLPQDGQFTVDL TGDSISFRIATLPCKEGEKVVLRLLHQVEQTLDLNTLGMYGAQLTAFRQALQQPQGLVLVTGPTGSGKTVTLYSALQTRN TPGINLCSVEDPIEIPLDGINQTQIHPRAGLTFQNVLRALLRQDPDIIMVGEIRDGDTAEIAIKAAQTGHLVLSTLHTNS TSETLIRLQQMGVARWMISSALTLVVAQRLVRKLCPHCKQRLNDPVVLSPNLWPSALPRWQASGCQHCYHGFYGRTALFE VLTVTPALRQLIASGASAQALEAHLQQTGTETLFENGCRAVEQGMTSFEEILRVLGMPHER |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 4e-69 | 46 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-69 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofB | YP_149492.1 | protein transport protein HofB | VFG2048 | Protein | 7e-71 | 46 |
| hofB | YP_149492.1 | protein transport protein HofB | VFG2426 | Protein | 4e-70 | 44 |
| hofB | YP_149492.1 | protein transport protein HofB | VFG0182 | Protein | 2e-73 | 44 |
| hofB | YP_149492.1 | protein transport protein HofB | VFG1876 | Protein | 1e-74 | 44 |
| hofB | YP_149492.1 | protein transport protein HofB | VFG0112 | Protein | 1e-77 | 44 |
| hofB | YP_149492.1 | protein transport protein HofB | VFG0233 | Protein | 7e-68 | 43 |
