|
Name : sseC (SPA1453) Accession : YP_150704.1 Strain : Salmonella enterica ATCC 9150 Genome accession: NC_006511 Putative virulence/resistance : Virulence Product : pathogenicity island effector protein Function : - COG functional category : S : Function unknown COG ID : COG5613 EC number : - Position : 1525847 - 1527301 bp Length : 1455 bp Strand : - Note : similar to Salmonella typhi CT18 putative pathogenicity island effector protein DNA sequence : ATGAATCGAATTCACAGTAATAGCGATAGCGCCGCAGGAGTAACCGCCTTAACACATCATCACTTAAGCAATGTCAGTTG CGTTTCCTCGGGTTCGCTGGGAAAGCGCCAGCATCGTGTGAATTCTACTTTTGGCGATGGCAACGCCGCGTGTCTGCTAT CCGGGAAAATTAGTCTTCAGGAGGCAAGCAATGCGTTGAAGCAACTGCTTGATGCCGTACCCGGAAATCATAAGCGTCCA TCATTGCCTGACTTTTTGCAGACCAATCCCGCGGTTTTATCAATGATGATGACGTCATTAATACTCAACGTCTTTGGTAA TAACGCTCAATCGTTATGCCAACAGCTTGAGCGGGCAACTGAGGTGCAAAATGCATTACGTAATAAGCAGGTAAAGGAGT ATCAGGAGCAGATCCAGAAAGCGATAGAGCAGGAGGATAAAGCGCGTAAAGCGGGTATTTTTGGCGCTATTTTTGACTGG ATTACCGGCATATTTGAAACCGTGATTGGCGCCTTAAAAGTTGTGGAAGGTTTTCTGTCCGGTAATCCCGCAGAAATGGC TAGCGGCGTAGCTTATATGGCCGCAGGTTGTGCAGGAATGGTTAAAGCCGGAGCCGAAACGGCAATGATGTGCGGTGCTG ACCACGATACCTGTCAGGCGATTATTGACGTGACAAGTAAGATTCAATTTGGTTGTGAAGCCGTCGCGCTGGCACTGGAT GTTTTCCAGATTGGCCGTGCTTTTATGGCGACGAGAGGTTTATCTGGCGCAGCTGCAAAAGTGCTTGACTCCGGTTTTGG CGAGGAAATGGTTGAGCGTATGGTTGGTGCAGGGGAAGCAGAAATAGAGGCGTTGGCTGAAAAGTTTGGCGAAGAAGTGA GCGAAAGTTTTTCCAAACAATTTGAGCCGCTTGAACGTGAAATGGTTTCGCCGGGCGAGATGGAAGAGGAGTCTGCCGAA TTTTCTCGTAACGTAGAAAAAAATATGACAAAAAATGCGGGAAAAAGTTTTACGAAAGAGGGGGTGAAAGCCATGGCAAA AGAAGCGGTAAAAGAAGCCCTGGAAAAATATGCGCAAGAAGGGGAAAAGTTTCTGTTAAAAAATTTTCGTAATAAAGTTC TCTTCAATATGTTCAAAAAAATCCTGTATGCCTTACTGAGGGATTGTTCATTTAAAGGCTTACAGGCTATCAGATGTGCA ACCGAGGGTGCCAATCAGATGAATACTGGCATGGTTAACACAGAAAAAGCGAAGCTTGAAAAGAAAATAGAGCAATTAAT AACTCAGCAACGGTTTCTGGATTTCATAATGCAACAAACGGATGACCAAAAAAAGATAGAACAAAAACGCTTAGAGGAGC TTTATAAGGGTAGCGGTGCCGCGCTTAGAGATGTATTAGATACCATTGATCACTATAGTAGCGTTCAGGCGAGAATAGCT GGCTGGCGCGCTTAA Protein sequence : MNRIHSNSDSAAGVTALTHHHLSNVSCVSSGSLGKRQHRVNSTFGDGNAACLLSGKISLQEASNALKQLLDAVPGNHKRP SLPDFLQTNPAVLSMMMTSLILNVFGNNAQSLCQQLERATEVQNALRNKQVKEYQEQIQKAIEQEDKARKAGIFGAIFDW ITGIFETVIGALKVVEGFLSGNPAEMASGVAYMAAGCAGMVKAGAETAMMCGADHDTCQAIIDVTSKIQFGCEAVALALD VFQIGRAFMATRGLSGAAAKVLDSGFGEEMVERMVGAGEAEIEALAEKFGEEVSESFSKQFEPLEREMVSPGEMEEESAE FSRNVEKNMTKNAGKSFTKEGVKAMAKEAVKEALEKYAQEGEKFLLKNFRNKVLFNMFKKILYALLRDCSFKGLQAIRCA TEGANQMNTGMVNTEKAKLEKKIEQLITQQRFLDFIMQQTDDQKKIEQKRLEELYKGSGAALRDVLDTIDHYSSVQARIA GWRA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sseC | NP_456128.1 | putative pathogenicity island effector protein | Virulence | SPI-2 | Protein | 0.0 | 99 |
| sseC | NP_805071.1 | pathogenicity island effector protein | Virulence | SPI-2 | Protein | 0.0 | 99 |
| sseC | CAA12187.1 | SseC | Virulence | SPI-2 | Protein | 0.0 | 96 |
| sseC | AAC28881.1 | SseC | Virulence | SPI-2 | Protein | 0.0 | 96 |
| sseC | NP_460365.1 | translocation machinery component | Virulence | SPI-2 | Protein | 0.0 | 96 |
| sseC | YP_216408.1 | secretion system effector protein SseC | Virulence | SPI-2 | Protein | 0.0 | 96 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sseC | YP_150704.1 | pathogenicity island effector protein | VFG0501 | Protein | 0.0 | 96 |
