Gene Information

Name : sseF (SPA1449)
Accession : YP_150700.1
Strain : Salmonella enterica ATCC 9150
Genome accession: NC_006511
Putative virulence/resistance : Virulence
Product : pathogenicity island effector protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1523541 - 1524323 bp
Length : 783 bp
Strand : -
Note : similar to Salmonella typhi CT18 putative pathogenicity island effector protein

DNA sequence : 
ATGAAAATTCATATTCCGTCAGCGGCAAGCAATATAGTCGATGGTAATAGTCCTCCTTCCGGTATACAAGCGAAGGAGGC
ATCGTTTCCTCCCCCTGAAATTCCAGCCCCTGGCACCCCTACAGTTCCTGTGGTGCTTACGCCTGAACAAATAAGGCAGC
AGAGGGATTATGCTATACATTTTATGCAATACACGATTCGTGCGCTGGGGGCGACAGTCGTGTTTGGATTATCGGTTGCT
GCAGCGGTAATTTCTGGCGGGGCAGGATTACCCATTGCTATTCTTGCGGGGGCGGCGCTCGTGATTGCTATTGGGGATGC
TTGCTGTGCGTATCATAATTATCAATTGATATGTCAGCAAAAGGAGCCGTTACAAACCGCCAGTGATAGCGTTGCTCTTG
TGGTCAGTGCGCTGGCCTTAAAATGTGGGGCAAGTCTTAACTGCGCTAACACCCTTGCTAATTGTCTTTCTTTATTAATA
CGTTCAGGAATCGCTATTTCTATGTTGGTTTTACCCCTACAGTTTCCACTGCCCGCCGCTGAAAATATAGCGGCCTCTTT
GGACATGGGGAGTGTAATTACCTCCGTTAGCCTGACGGCGATAGGTGCGGTACTGGATTATTGCCTTGCCCGCCCCTCTG
GCGACGATCAGGAAAATTCTGTTGATGAACTTCATGCCGATCCCAGTGTGTTATTGGCAGAACAAATGGCAGCGCTCTGT
CAATCTGCTACTACACCTGCATTAATGGACAGTTCTGGTCATACATCTCGGGGAGAACCATGA

Protein sequence : 
MKIHIPSAASNIVDGNSPPSGIQAKEASFPPPEIPAPGTPTVPVVLTPEQIRQQRDYAIHFMQYTIRALGATVVFGLSVA
AAVISGGAGLPIAILAGAALVIAIGDACCAYHNYQLICQQKEPLQTASDSVALVVSALALKCGASLNCANTLANCLSLLI
RSGIAISMLVLPLQFPLPAAENIAASLDMGSVITSVSLTAIGAVLDYCLARPSGDDQENSVDELHADPSVLLAEQMAALC
QSATTPALMDSSGHTSRGEP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sseF NP_456124.1 putative pathogenicity island effector protein Virulence SPI-2 Protein 8e-88 99
sseF NP_805075.1 pathogenicity island effector protein Virulence SPI-2 Protein 8e-88 99
sseF AAC28885.1 SseF Virulence SPI-2 Protein 1e-86 98
sseF NP_460369.1 secreted effector protein Virulence SPI-2 Protein 2e-86 98
sseF CAA12191.1 SseF Virulence SPI-2 Protein 3e-85 97
sseF YP_216412.1 secretion system effector protein SseF Virulence SPI-2 Protein 2e-83 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sseF YP_150700.1 pathogenicity island effector protein VFG0505 Protein 8e-87 98