|
Name : xerD (GK2315) Accession : YP_148168.1 Strain : Geobacillus kaustophilus HTA426 Genome accession: NC_006510 Putative virulence/resistance : Unknown Product : site-specific tyrosine recombinase XerD Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 2345163 - 2346059 bp Length : 897 bp Strand : - Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d DNA sequence : TTGGAATACGAGTTGAAAGATTTTCTGCATTATTTGACGGTGGAGCGGAATTTGGCGCACAATACGATCGTTTCATATGA ACGCGATTTGAAAAAATACGTCCGCTATTTGCGCCAAGTCGAGCAGCTTCAGGCGTGGGGCGAAGTGGAGCGCCTCCATA TTCTCCATTTTTTAAAGTTTTTAAGCGAACAAGGGCAATCGGCGCGGACGATCGCCCGCCATTTGGCGTCGATCCGTTCG TTTCATCAGTTTTTGCTAAGGGAGAAAATCGCGGCGCAAGACCCGACCGTCCATATCGAAACGCCGCAGTTTGAACGGAC GCTGCCGAAAGTGCTGTCGGTCGAGGAAGTCGAGGCGCTGCTTGCAGCGCCGCAAGTGAGCACACCGTTTGGGCTGCGCG ACAAGGCGATGCTGGAGCTGTTGTATGCGACCGGCATGCGCGTCAGTGAGCTTGTGCAGCTCAACTTAAGCGACGTGCAT TTGACGATGGGGTTTGTCCGCTGCTATGGAAAAGGGCGGAAAGAGCGGATCGTGCCGATCGGGCGCATGGCGATTGAAGC GCTTGCCCACTATTTGGAGCGAGGGCGCCCGCAGCTTGTCAATCCGCGACGACGGGCAACGGAGGCGCTGTTTTTGAACC ATTATGGCCAGCGGTTGACACGGCAAGGATTTTGGAAAATTTTAAAGCGGCTCGCGAAAGAAGCCGGCATCGAAAAAGAA TTGACGCCGCATACGCTTCGGCATTCGTTTGCGACGCATCTGCTTGAGAACGGAGCCGATTTGCGCGCTGTGCAAGAGTT GCTTGGGCATGCCGACATTTCGACGACGCAAATGTATACGCATGTTACGAAAACGCGCCTAAAAGACGTGTACAAACAGT ACCACCCGCGCGCCTAG Protein sequence : MEYELKDFLHYLTVERNLAHNTIVSYERDLKKYVRYLRQVEQLQAWGEVERLHILHFLKFLSEQGQSARTIARHLASIRS FHQFLLREKIAAQDPTVHIETPQFERTLPKVLSVEEVEALLAAPQVSTPFGLRDKAMLELLYATGMRVSELVQLNLSDVH LTMGFVRCYGKGRKERIVPIGRMAIEALAHYLERGRPQLVNPRRRATEALFLNHYGQRLTRQGFWKILKRLAKEAGIEKE LTPHTLRHSFATHLLENGADLRAVQELLGHADISTTQMYTHVTKTRLKDVYKQYHPRA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00307 | YP_008207772.1 | Site-specific recombinase XerD | Not tested | AbaR25 | Protein | 4e-57 | 45 |
| BJAB0868_00311 | YP_008211637.1 | Site-specific recombinase XerD | Not tested | AbaR26 | Protein | 4e-57 | 45 |
