Gene Information

Name : fliP (PBPRA0932)
Accession : YP_129145.1
Strain :
Genome accession: NC_006370
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1030622 - 1031476 bp
Length : 855 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence : 
ATGATAAAAAATAATCTTATTGCTGTTGTTCTGGCGGCTTTTGCTTTCTTTGTCAGTTTACCTGTAATGGCAGAGGCGGA
TGCAATGGTACTGCCTGCGACGTCAGCCAGTGAAAGCGTAACCGTGAGTAGCATGCAAAACGACCAAGGCGCAGCGAGCT
TTATTCAATCTGCAAGTCGTGGTGGTATTCCTGCTTTTTCTGTCACCACTAATCCTGATGGCAGCGAAGATTATTCGGTA
ACCTTGCAGATCCTCGGTTTAATGACGGCATTGGGTTTTCTGCCTGCCATTATTATTTTGATGACCTCATTTACACGTAT
TGTCGTGGTGTTATCCATTCTTCGACAAGCAATGGGTTTACAACAGACGCCATCGAATCAGGTTATTATTGGTATTGCAC
TGTTTCTGACATTATTTGTGATGTCGCCAGTCATCGATAAAGTAAATGCTGATGCTGTTCAGCCCTATATCAATGAAGAA
ATTACCGCAGCGCAGGCATTTGAAACAGCCCAAGTGCCGTTACGCCAATTTATGCTCAAACAAACACGTGTTAAAGACTT
AGAAAGTTTCGTTAATATGTCAGGTTCGACAGCGACGGCACCCGAAGATGTGCCGATTACGGTATTGATTCCTGCGTTCA
TAACGTCTGAATTGAAAACGGCATTTCAGATTGGATTTATGCTGTTTTTGCCTTTCTTGATCATTGACCTTGTTGTTGCT
TCTGTCTTGATGGCAATGGGTATGATGATGCTGTCACCGATGATCGTATCGTTACCCTTTAAGTTAATGTTGTTTGTTCT
GGTTGATGGCTGGAACCTTATCTTGTCTACATTGGCGGGAAGTTTCGGTACTTAG

Protein sequence : 
MIKNNLIAVVLAAFAFFVSLPVMAEADAMVLPATSASESVTVSSMQNDQGAASFIQSASRGGIPAFSVTTNPDGSEDYSV
TLQILGLMTALGFLPAIIILMTSFTRIVVVLSILRQAMGLQQTPSNQVIIGIALFLTLFVMSPVIDKVNADAVQPYINEE
ITAAQAFETAQVPLRQFMLKQTRVKDLESFVNMSGSTATAPEDVPITVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVA
SVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSFGT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-26 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-26 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-26 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-26 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-26 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-25 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-25 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-25 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-25 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-25 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-25 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-26 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-26 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-25 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_129145.1 flagellar biosynthesis protein FliP VFG1259 Protein 4e-66 68
fliP YP_129145.1 flagellar biosynthesis protein FliP VFG2016 Protein 3e-58 63
fliP YP_129145.1 flagellar biosynthesis protein FliP VFG2494 Protein 6e-55 58
fliP YP_129145.1 flagellar biosynthesis protein FliP VFG2338 Protein 3e-49 56
fliP YP_129145.1 flagellar biosynthesis protein FliP VFG0519 Protein 6e-26 42