Gene Information

Name : PBPRA0882 (PBPRA0882)
Accession : YP_129096.1
Strain :
Genome accession: NC_006370
Putative virulence/resistance : Virulence
Product : DNA methylase HsdM
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG0286
EC number : -
Position : 973507 - 975888 bp
Length : 2382 bp
Strand : +
Note : -

DNA sequence :
TTGTTTAGTTGGTCTATCGCAGATGACTGCCTTCGAGATGTTTACGTGCGTGGTAAGTACCGTGACGTTATCTTGCCTAT
GGTCGTATTGCGTCGTTTAGATTCCCTGTTAGAAGCTACAAAAAAAGAAATTCTAGAAGAAGTAGCATTTCAGCGTGATG
AAATGGAATCGACTGAATTCGACAGCGCTCCACTAGAAGCCATTACAGGCTATGTGTTCTACAACACCAGTAAGTGGACG
CTCAAACAAATTACAGCGACAGCATCAAATAACCAACAGATCCTACTTGCTAACGTTGAAGAATATTTGAATGGCTTTAG
CGATAACGTAAAAGAAATCATCAAGTGCTTTAAGCTCCAATCACAAATCCGTCACATGGCAGAAAAAGACATACTGCTTG
ATGTACTAGAAAAGTTCACTTCGCCAAACATCAACTTAACTCCAAATGTAGTCGAAGACCCTGATGGCAATAAGCTACCT
GCACTGTCTAACTTAGGTATGGGTTATGTGTTTGAAGAGCTAATCCGTAAATTTAACGAAGATAATAATGAAGAAGCTGG
TGAACACTTTACCCCTCGTGAAGTAATCGAGTTAATGACTCACCTTGTCTTTGACCCACTAAAAGGTAACCTACCACCCG
TTATTACCCTGTATGATCCCGCATGCGGAAGTGGCGGTATGCTGACAGAAGCACAGAATTTCATCAAAGATCCAGAAGGT
AAAATTAAAGCAACAAGTGATGTTTATCTTTTTGGTAAAGAGATAAATGATGAGACCTACGCCATCTGTAAATCAGACAT
GATGATCAAAGGTGATAACCCTGAAAACATCCGTGTAGGCTCAACACTTTCTACCGATGAATTCGCAGGTAAAACCTTCC
ACTACTGTCTTTCGAATCCACCTTACGGTAAGAGCTGGGCTAGTGAGCAGAAGTACATCAAAGATGGCAAAGAAGTCATC
GACTCTCGCTTTAAAGTTAAATTAAAAGATTACTGGGGGGTTGAAGATACCTATGAAGCTATACCTCGCTCCAGTGACGG
CCAGTTGCTGTTCTTAATGGAAATGGTCAGCAAAATGAAATCCGTTAACAATGGAGTTGAAGGTTCTCGTATTGCTTCCG
TTCATAATGGGTCAAGCTTGTTCACCGGAGATGCAGGTGGCGGTGAAAGTAACATCCGTCGTTACATCATTGAAAACGAC
ATGCTAGAAGCTATTGTTCAACTACCAAATAACCTATTCTACAACACCGGTATCACGACTTATATCTGGCTATTGTCTAA
CAACAAATTAGACAAGCGTAAAGGACAAGTACAGCTAATTGATGCCAATCCACTTTACCGCAAGCTACGTAAAAACCTTG
GTGATAAAAACTGTGAGTTCTCACCTGAGCACATTCGTGAAATAACCAAAACTTACCTAGATATGACAAAAGTGGAACGT
ACACTCGATGAGAAAGGCGATCCGCAAGGTATTTCAACTAAAGTATTTGATAATGATGATTTTGGTTACTATAAGGTCAA
CATCGAGTGTCCTGATCGTCGTAATGCACAATTCAGCAGTGAACGTATTGAAACATTACGTTTTGATAAAGCTCTGCGTG
AGCCAATGGAATATATCTATAATACCTATGGTGAAGATGCTTATAAAGCCGAAATACTGGCCAAGGAGAGCAAGGCCATA
CTTGCTTGGTGTGAAGAAAAAGAAATCAGCCTCAATACCAAGAACCGTAATAAGCTGTTAGACGTTGCGACTTGGACAAG
ATTGGGTGATTTGATTGATATCGCTAACACGCTGATGAAAGCTATTGGTACAGACATTTATAACGATTACAATCAATTCA
AGGCAACTGTCGATGCCGAGTTAAAATCGCGTAAGATCAAACTTTCTGCCCCAGAAAAAAATGCCATTTTAAATGCTGTC
AGTTGGTATCACGAAAATGCAGAAAAAGTTATCAAGAAGAAGCTCAAACTAACTGGTAGCAAGCTTGACGAACTATTAAC
AAGCTGCGATTGCGATGAACATGAATTAGGTGATTTTGGTTATTACCTTATTGCAAAAGAAGACGGCGGTAAAGCTGGTG
AATACATCACATATGAATCAAATTCAGATCTGCGTGATGCCGAATCTATTCCTCTCAAACAAAGTATCTACCAGTACTTC
CTTGATGAAGTGAAGCCACACGTTTCCGATTCATGGATCAACATCGATAGCACTAAAATTGGTTACGAGATCAGCTTTAA
CAAGCATTTCTACCAGCATAAGCCGCTTCGCTCAATAGATGATGTAGCCAAAGACATCATTGCACTAGAGCAAAAAGCAG
AAGGATTGATGGCAGAAATTCTTGGCATTTCAGTATCAACACTGACTCATGAGGATGCGTAA

Protein sequence :
MFSWSIADDCLRDVYVRGKYRDVILPMVVLRRLDSLLEATKKEILEEVAFQRDEMESTEFDSAPLEAITGYVFYNTSKWT
LKQITATASNNQQILLANVEEYLNGFSDNVKEIIKCFKLQSQIRHMAEKDILLDVLEKFTSPNINLTPNVVEDPDGNKLP
ALSNLGMGYVFEELIRKFNEDNNEEAGEHFTPREVIELMTHLVFDPLKGNLPPVITLYDPACGSGGMLTEAQNFIKDPEG
KIKATSDVYLFGKEINDETYAICKSDMMIKGDNPENIRVGSTLSTDEFAGKTFHYCLSNPPYGKSWASEQKYIKDGKEVI
DSRFKVKLKDYWGVEDTYEAIPRSSDGQLLFLMEMVSKMKSVNNGVEGSRIASVHNGSSLFTGDAGGGESNIRRYIIEND
MLEAIVQLPNNLFYNTGITTYIWLLSNNKLDKRKGQVQLIDANPLYRKLRKNLGDKNCEFSPEHIREITKTYLDMTKVER
TLDEKGDPQGISTKVFDNDDFGYYKVNIECPDRRNAQFSSERIETLRFDKALREPMEYIYNTYGEDAYKAEILAKESKAI
LAWCEEKEISLNTKNRNKLLDVATWTRLGDLIDIANTLMKAIGTDIYNDYNQFKATVDAELKSRKIKLSAPEKNAILNAV
SWYHENAEKVIKKKLKLTGSKLDELLTSCDCDEHELGDFGYYLIAKEDGGKAGEYITYESNSDLRDAESIPLKQSIYQYF
LDEVKPHVSDSWINIDSTKIGYEISFNKHFYQHKPLRSIDDVAKDIIALEQKAEGLMAEILGISVSTLTHEDA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1769 NP_231404.1 DNA methylase HsdM Not tested VPI-2 Protein 0.0 73
VC0395_A1367 YP_001217310.1 DNA methylase HsdM Not tested VPI-2 Protein 0.0 73
VPI2_0017c ACA01834.1 DNA methylase HsdM Not tested VPI-2 Protein 0.0 73

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PBPRA0882 YP_129096.1 DNA methylase HsdM VFG1102 Protein 0.0 73