|
Name : PBPRA3481 (PBPRA3481) Accession : YP_131554.1 Strain : Genome accession: NC_006370 Putative virulence/resistance : Virulence Product : type II secretory pathway, component EpsD Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 3933652 - 3935664 bp Length : 2013 bp Strand : - Note : - DNA sequence : GTGAAAAAATGGATGAGTAAAAGCGCCCTGTTTTTAGCAGGTAGTTTGCTATGTAGCTCAGTGATGGCCAGTGAATTTAG TGCCAGTTTTAAAGGAACTGATATTCAAGAATTCATTAATATTGTAGGGCGAAATCTACAAAAAACGATCATTGTCGACC CTGCGGTGCGCGGTCAAGTCAATGTACGTAGCTATGACCTTTTAAATGACGAACAATATTATCAATTCTTTTTAAATGTT TTAGAAGTGTATGGCTTTGCTGTTGTTGAAATGGATAACGGCGTACTAAAAGTAATTCGTGATAAAGATGCCAAAACATC TGCGATACCAGTGATAGATGGTAACGATAAAGTCTCTGGTGATGAAGTCGTCACCCGTGTGATTGCGGTACGTAATGTAT CGGTGCGTGAGCTTTCTCCGTTGCTGCGTCAGTTAAATGATAATGCGGGTGCTGGTAATGTTGTGCATTACGACCCAGCG AATATCATTATGATTACGGGGCGTGCTGCGGTGGTGAACCGTTTGGCTGAAATCATTGAACGGGTCGATCGGGCTGGTGA TAAAGAAGTGGATGTTGTGGAGCTGCGTAATGCCTCGGCCGCTGAAATGGTGCGCATTGTTGATGCATTAAATAAAAGTG CCAGTGCTAAAACAACGCCAGGTTTTTTACAGCCCAAAGTGGTGGCTGATGAGCGTACCAATGCCGTGTTGTTATCGGGT GATCCCCAAGTCAGAAAGCGTCTAAGAAAGTTGATTCATCAGCTGGATAAAGAGATGGCGACGTCTGGTAATAATCGGGT TATTTATTTGAAGTATGCCAATGCTGAAGATATGGTCGATGTACTTAAAGGTGTATCAGACAATCTCCAATCTGAAAAGC AAGGTGCAAGTAAGACTCCAGTTGGAAGCAATAAAAGCACCGTCATGATTTCGGCCCATGTCGGGACAAATGCCCTTATC GTGACAGCGCCGCCAGATATTATGCGTGCATTAGAAAGCATTATTGCTCAGCTAGATATTCGCCGTGCGCAGGTACTGAT TGAAGCCATGATTGTTGAACTGTCTGAAGGTGATGGTATTAACTTCGGGGTGCAGTATGGCTCAGCAGATGGTGGGGTCA TTCAATTTGGTAACTCCAACGTCCCTATTTCCCAATACGCGATCGGCTTGCAAGAAGCACAAGATGTACCAGGTTCGACT GTTATTAACTCCGATGGTACAACAACGATTAATGAAGCGACTCAAGGTGACTTCTCGACCTTGGCCAGTGTGCTTGGCGG CGTTAACGGTGCGGCATTGGGTATTGTAATGGGCGACTGGACGATGTTAGTGAATGCGGTTGCCACAGACAGTAATTCGA ACATACTGTCATCGCCAAGTATCACGGTGCTGGATAACAGTGAAGCCTCGTTTATTGTCGGTGAAGAAGTCCCAGTGGTA ACAGGTTCGACTTCAAGTTCAAGCAATGATAATCCCTTCCAAACGGTGGAACGTAAAGAAGTCGGTATCAAGCTAAATGT CACGCCACAGATTAACGAAGGCGATTCGGTTCAACTTAAAATTGAGCAAGAAGTCTCAAGTGTATTAGGCGCGAGTGGCG CTGTTGATGTGCGTTTTGCTAAACGTCAGATCAATACCACGGTGCTGGTTAAAGATGGACAAATGATTGCGTTGGGCGGT TTGATCAGCGAAGAAACCAAAGAGAGTGAGTCTAAAATTCCTATCTTAGGTGATATTCCGTTCTTGGGTTTCTTGTTTAA ATCGACCAATACGACCACTGCAAAAACAAACTTGATGGTATTCATTAAGCCAACCATTATTCGCGATGGTGTCACTGCCG ATGGTATTACTCAGCGTAAATATAACTATATTCGTGCAGAGCAACTCTATAAAGCAGATCAAGGCTTAAGTTTAATGCCA AATATCAAAATGCCAGTATTGCCTAAGTTTGGTGAGAATATTGAGCTGCCGCCAGAAGTGCGTGCCTTTGTTGCACAACT GGAGAGTCAGTAA Protein sequence : MKKWMSKSALFLAGSLLCSSVMASEFSASFKGTDIQEFINIVGRNLQKTIIVDPAVRGQVNVRSYDLLNDEQYYQFFLNV LEVYGFAVVEMDNGVLKVIRDKDAKTSAIPVIDGNDKVSGDEVVTRVIAVRNVSVRELSPLLRQLNDNAGAGNVVHYDPA NIIMITGRAAVVNRLAEIIERVDRAGDKEVDVVELRNASAAEMVRIVDALNKSASAKTTPGFLQPKVVADERTNAVLLSG DPQVRKRLRKLIHQLDKEMATSGNNRVIYLKYANAEDMVDVLKGVSDNLQSEKQGASKTPVGSNKSTVMISAHVGTNALI VTAPPDIMRALESIIAQLDIRRAQVLIEAMIVELSEGDGINFGVQYGSADGGVIQFGNSNVPISQYAIGLQEAQDVPGST VINSDGTTTINEATQGDFSTLASVLGGVNGAALGIVMGDWTMLVNAVATDSNSNILSSPSITVLDNSEASFIVGEEVPVV TGSTSSSSNDNPFQTVERKEVGIKLNVTPQINEGDSVQLKIEQEVSSVLGASGAVDVRFAKRQINTTVLVKDGQMIALGG LISEETKESESKIPILGDIPFLGFLFKSTNTTTAKTNLMVFIKPTIIRDGVTADGITQRKYNYIRAEQLYKADQGLSLMP NIKMPVLPKFGENIELPPEVRAFVAQLESQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-171 | 57 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 4e-180 | 57 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PBPRA3481 | YP_131554.1 | type II secretory pathway, component EpsD | VFG2047 | Protein | 1e-167 | 56 |
