|
Name : PBPRA1165 (PBPRA1165) Accession : YP_129378.1 Strain : Genome accession: NC_006370 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1309717 - 1311009 bp Length : 1293 bp Strand : + Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTAGATTCTAAATTACTTCGAACTGAGCTGGATGAAACAGCTGCAAAACTCGCGCGTCGTGGTTTTACCCTTGACGT TGAAAATTTACGTCTTCTTGAAGAAAAGCGTAAGTCCCTTCAGATGATGACTGAAGATCTTCAAGCACAGCGTAACGCGC GATCGAAGTCGATTGGTCAAGCGAAAGCACAAGGCAATCACGAAGAAGCAGAAAAAATTCTAGCTGAAGTCGCAAACCTT GGTAGTGATCTAGACGATGCGAAAAAAGCATTGTCAGAACTTCTTGATGAGCTTCAAAGCATCACTATGATGGTACCAAA CCTTCCGGATGATTCTGTACCTGCTGGTAACGATGAAGACGAGAACGTTGAAATTTCACGTTGGGGTGAGCCAAAAGCTT ACGATTTCGAAGTGAAAGATCACGTTGATCTTGGTGAAATGGCTGGTGGTCTTGATTTCGCAAGTGCCGTGAAGATTTCA GGTTCACGTTTTATCGTGATGAAAGGTCAATTCGCGCGTCTACACCGTGCAATCGCTCAGTTCATGCTAGATCTTCATAC AGAAGAACATGGCTACACTGAAATGTACGTACCTTACCTAGTTAACGCAGACAGCCTATTTGGTACTGGTCAGCTTCCTA AGTTTGGTGAAGATTTGTTCCATACTAAGCCTGCGACTGAAGAAGGCGTTGGTATGTCACTTATACCAACGGCAGAAGTA CCTGTAACGAACATGGTTCGCGATACGATTACAGATGAAGCAGATCTTCCATTGAAGATGACGGCTCACACACCGTGTTT CCGTTCTGAAGCGGGTTCGTACGGTCGTGATACTCGCGGTCTTATTCGTATGCACCAATTCGACAAAGTTGAATTAGTTC AGATCACCAAGCCTGAAGATTCAATGGCAGCACTAGAAGAACTAACGGGTCATGCCGAGAAGGTACTTCAGCTACTAGAA CTCCCTTACCGTAAAGTGATTCTTTGTACGGGTGATATGGGCTTTGGCGCCGCGAAAACATACGACTTAGAAGTATGGGT TCCAGCTCAAAACACCTACCGTGAAATCTCTTCATGTTCAAACATGCAAGACTTCCAAGCACGCCGTATGCAAGCACGCT TCCGTCGTAAAGGTGAGAAGAAGCCAGAGCTTGTTCACACACTTAACGGTTCAGGCCTTGCGGTTGGTCGTACAATGGTT GCTATCATGGAAAATGGTCAGCAAGCAGATGGTCGCATTGAAATCCCTGTAGTACTTCGTAAGTACATGCAAGGTGCAAC GCATATCGGTTAA Protein sequence : MLDSKLLRTELDETAAKLARRGFTLDVENLRLLEEKRKSLQMMTEDLQAQRNARSKSIGQAKAQGNHEEAEKILAEVANL GSDLDDAKKALSELLDELQSITMMVPNLPDDSVPAGNDEDENVEISRWGEPKAYDFEVKDHVDLGEMAGGLDFASAVKIS GSRFIVMKGQFARLHRAIAQFMLDLHTEEHGYTEMYVPYLVNADSLFGTGQLPKFGEDLFHTKPATEEGVGMSLIPTAEV PVTNMVRDTITDEADLPLKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVELVQITKPEDSMAALEELTGHAEKVLQLLE LPYRKVILCTGDMGFGAAKTYDLEVWVPAQNTYREISSCSNMQDFQARRMQARFRRKGEKKPELVHTLNGSGLAVGRTMV AIMENGQQADGRIEIPVVLRKYMQGATHIG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 1e-96 | 55 |
