Gene Information

Name : PBPRA1001 (PBPRA1001)
Accession : YP_129214.1
Strain :
Genome accession: NC_006370
Putative virulence/resistance : Virulence
Product : transcriptionalregulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1108681 - 1109358 bp
Length : 678 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAATACTCATTATTGAAGATGAAACCAAACTGGGTAAATATCTCCAACTCGGATTAAATGAAAGTAGCTTCGCCAC
TGATTGGGTAAATAACGGTTTGGATGGCTTACATCAAGCCATGTCGCCTGAATATGATTTAATCCTTCTTGATGTCATGT
TGCCAGATCTTGATGGATGGAAGATATTAACTCAAATTAAAACACACTATCCAACACGTCCAATAATCATGCTGACAGCA
CGAGACAGTGTTGAAGATCGGGTAAAAGGCTTACAGTTAGGCGCTGATGATTATTTAGTTAAACCCTTTGCATTTATTGA
GCTTATTGCTCGTATACAAAACCAAGTTCGGAAAAATGAAAATGTAGCAGCAAAAACAACGCTTACCATTGGGGATTTAC
ACGTCGATCTTCTTCGCCGACGCGTAACACGTAATGACCAACATATCGATCTAACAGCGAAAGAGTTTTTATTGCTCGAA
CTATTGGTTTCACGTGAAAAAGAGGTGCTATCTAAGGCATTTATTGCCAGTAAAGTGTGGGATATGAATTTTGATAGTGA
TACTAATGTTATTGAGGTGGCGATTCGACGGCTTCGCAAAAAAGTAGATGACCCATTTGAATTCAAGCTCATTCATACCT
TACGCGGCATGGGATATGTAATGGAGAGTCGAGAGTGA

Protein sequence : 
MKILIIEDETKLGKYLQLGLNESSFATDWVNNGLDGLHQAMSPEYDLILLDVMLPDLDGWKILTQIKTHYPTRPIIMLTA
RDSVEDRVKGLQLGADDYLVKPFAFIELIARIQNQVRKNENVAAKTTLTIGDLHVDLLRRRVTRNDQHIDLTAKEFLLLE
LLVSREKEVLSKAFIASKVWDMNFDSDTNVIEVAIRRLRKKVDDPFEFKLIHTLRGMGYVMESRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-46 56
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-45 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PBPRA1001 YP_129214.1 transcriptionalregulator BAC0083 Protein 3e-58 60
PBPRA1001 YP_129214.1 transcriptionalregulator BAC0197 Protein 9e-56 59
PBPRA1001 YP_129214.1 transcriptionalregulator BAC0638 Protein 1e-58 58
PBPRA1001 YP_129214.1 transcriptionalregulator BAC0125 Protein 7e-51 57
PBPRA1001 YP_129214.1 transcriptionalregulator BAC0308 Protein 6e-51 57
PBPRA1001 YP_129214.1 transcriptionalregulator BAC0111 Protein 2e-53 54
PBPRA1001 YP_129214.1 transcriptionalregulator BAC0347 Protein 2e-47 49
PBPRA1001 YP_129214.1 transcriptionalregulator HE999704.1.gene1528. Protein 6e-29 44
PBPRA1001 YP_129214.1 transcriptionalregulator NC_010079.5776364.p0 Protein 2e-29 41
PBPRA1001 YP_129214.1 transcriptionalregulator NC_002952.2859858.p0 Protein 2e-29 41
PBPRA1001 YP_129214.1 transcriptionalregulator NC_007622.3794948.p0 Protein 2e-29 41
PBPRA1001 YP_129214.1 transcriptionalregulator NC_003923.1003417.p0 Protein 2e-29 41
PBPRA1001 YP_129214.1 transcriptionalregulator NC_013450.8614146.p0 Protein 2e-29 41
PBPRA1001 YP_129214.1 transcriptionalregulator NC_002951.3238224.p0 Protein 2e-29 41
PBPRA1001 YP_129214.1 transcriptionalregulator AE015929.1.gene1106. Protein 6e-25 41
PBPRA1001 YP_129214.1 transcriptionalregulator NC_007793.3914065.p0 Protein 2e-29 41
PBPRA1001 YP_129214.1 transcriptionalregulator NC_002758.1121390.p0 Protein 2e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PBPRA1001 YP_129214.1 transcriptionalregulator VFG0596 Protein 1e-46 56
PBPRA1001 YP_129214.1 transcriptionalregulator VFG1389 Protein 1e-26 41