Gene Information

Name : nfa46550 (nfa46550)
Accession : YP_120870.1
Strain : Nocardia farcinica IFM 10152
Genome accession: NC_006361
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4852746 - 4853489 bp
Length : 744 bp
Strand : -
Note : -

DNA sequence :
ATGACTTCTCCAGCAGCGGCGGTCGCGGCCCGCGCCATCGACCTGACCAAGGTGTACGGGTCGGCGGACACGCAGGTCAG
GGCGTTGGACGGGATCTCCGCCGAATTCGCCAAGGGCGAGTTCACCGCCATCATGGGCCCGTCCGGGTCGGGCAAGTCGA
CGCTGATGCACTGCCTGGCGGGATTGGACAGCGCCACCTCGGGGACGGTGCGCATCGGCGACACCGATCTCACCGAGCTG
ACCGACAAGCAGATGACGATGTTGCGCCGGGACCGGATCGGGTTCGTGTTCCAGGCGTTCAATCTGGTGCCGACACTCAC
CGCGCTGGAGAACATCACGCTCCCGCTCGACATCGCAGGCCGCAAACCGGACCAGGAGTGGCTGGCGACGGTGATCAAGC
GGCTCGGTCTCGGCGACCGGCTCACCCATCGCCCCAGCGAGCTCTCCGGTGGCCAGCAGCAGCGCGTCGCGTGCGCGCGG
GCGCTGGCAGGCAAGCCGGACATCATCTTCGGCGACGAGCCGACCGGCAACCTCGATTCCCGTTCCAGCGCCGAGGTGCT
GTCGATCCTGCGCGCGGCCGTGGACGAATTCGGCCAGACCGTCGTCATGGTCACGCACGAACCGCACGCCGCCGCCTACG
CCGACCGGGTGGTGTTCCTCGCCGACGGCCGCATCGTGGACGAATTGCGCGGCCCCACCGCCGATTCCGTGCTCGATCGG
ATGAAGGCACTGGAGACGGTGTGA

Protein sequence :
MTSPAAAVAARAIDLTKVYGSADTQVRALDGISAEFAKGEFTAIMGPSGSGKSTLMHCLAGLDSATSGTVRIGDTDLTEL
TDKQMTMLRRDRIGFVFQAFNLVPTLTALENITLPLDIAGRKPDQEWLATVIKRLGLGDRLTHRPSELSGGQQQRVACAR
ALAGKPDIIFGDEPTGNLDSRSSAEVLSILRAAVDEFGQTVVMVTHEPHAAAYADRVVFLADGRIVDELRGPTADSVLDR
MKALETV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-37 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-39 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-39 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-39 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
nfa46550 YP_120870.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 4e-54 48
nfa46550 YP_120870.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 4e-43 47
nfa46550 YP_120870.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-39 46
nfa46550 YP_120870.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 3e-42 46
nfa46550 YP_120870.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 2e-33 42