Gene Information

Name : nfa42490 (nfa42490)
Accession : YP_120462.1
Strain : Nocardia farcinica IFM 10152
Genome accession: NC_006361
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4399444 - 4400172 bp
Length : 729 bp
Strand : +
Note : -

DNA sequence : 
ATGTCGGAACCGGCCATGCTGGAGCTCTCGGACATAACCAAGCAGTACCGGGTCGGCGGGCAGACGGTGCGCGCCCTCGA
CGGGGTGAGCCTGCGGATCGAGCGGGGTGAGTTCACCTCGATCATCGGCCCGTCCGGCTCCGGCAAGAGCACCCTGCTGC
ACCTGCTGGGCGCGCTCGACACCCCCGATGCCGGCTCGATCCGGTTCCAGGGCAAGGAGATCGGCTCCTTGACCGAGGAG
CGGCAGGCCGAGTTCCGCAGGCACCAGGTGGGTTTCGTTTTCCAGTTCTTCAACCTGCTGCCCACGCTGAGCGCCTGGGA
GAACGTCGCGATTCCGAAGTTGCTGGACGGCACCGGATTGCGCAAGGCCAAGCCCCGCGCGCTCGAACTGCTGGCACGGG
TCGGCCTGGCCGACCGGGCCGAGCACCGGCCCGCCGAGCTGTCGGGCGGCCAGATGCAGCGGGTGGCGGTGGCCAGGGCG
CTGATCATGGACCCGCCGCTGATCCTCGCCGACGAGCCGACCGGCAATCTCGATTCCAAGACCGGCGCGGCCATTCTGGA
ACTGCTGGGCGGGCTGACCGGCGAGGGCAACTCGGTGGTGATGGTCACCCACGACATGGGCGCGGTGCGCTACTGCGACC
GGGTGATCACATTGCGCGACGGCACCATCGGCTCGATCGAGCGCACCGAGCGCCGCGCCGGCCTGGACGAGGGCACGGTG
CCCGCATGA

Protein sequence : 
MSEPAMLELSDITKQYRVGGQTVRALDGVSLRIERGEFTSIIGPSGSGKSTLLHLLGALDTPDAGSIRFQGKEIGSLTEE
RQAEFRRHQVGFVFQFFNLLPTLSAWENVAIPKLLDGTGLRKAKPRALELLARVGLADRAEHRPAELSGGQMQRVAVARA
LIMDPPLILADEPTGNLDSKTGAAILELLGGLTGEGNSVVMVTHDMGAVRYCDRVITLRDGTIGSIERTERRAGLDEGTV
PA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-32 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-32 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-32 41
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
nfa42490 YP_120462.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 6e-37 53
nfa42490 YP_120462.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 2e-43 48
nfa42490 YP_120462.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 2e-39 45
nfa42490 YP_120462.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 3e-39 43