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Name : nfa4150 (nfa4150) Accession : YP_116621.1 Strain : Nocardia farcinica IFM 10152 Genome accession: NC_006361 Putative virulence/resistance : Virulence Product : Clp protease Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 433460 - 436015 bp Length : 2556 bp Strand : + Note : - DNA sequence : ATGTTCGAGAGGTTCACCGACCGCGCGAGGCGCGTCGTTGTCCTGGCCCAAGAAGAGGCCCGGATGCTCAACCACAACTA CATCGGCACCGAGCACATCCTGCTTGGCCTGATCCATGAGGGTGAAGGTGTCGCGGCCAAGTCGCTGGAGTCCCTCGGCA TTTCGCTCGAGGGTGTGCGCAGCCAGGTCGAGGAGATCATCGGTCAGGGCCAGCAGGCCCCGTCCGGGCACATCCCCTTC ACCCCGCGCGCCAAGAAGGTGCTGGAGCTGAGCCTGCGCGAGGCGCTGCAGCTCGGCCACAACTACATCGGCACCGAGCA CATCCTGCTCGGCCTCATCCGCGAGGGCGAGGGCGTGGCGGCCCAGGTGCTGGTCAAGCTCGGCGCCGACCTGAACCGGG TCCGTCAGCAGGTCATCCAGCTGCTGTCGGGCTACCAGGGCAAGGAGCCGGTGGAGTCGGGCGCGCGTGGCGAGACGGGC ACCCCGTCCACCTCGCTGGTGCTCGACCAGTTCGGCCGCAACCTCACCCAGGCCGCGCTCGAGGGCAAGCTCGACCCGGT GATCGGCCGCTCGAAGGAGATCGAGCGGGTCATGCAGGTGCTCAGCCGCCGCACCAAGAACAACCCGGTGCTGATCGGCG AGCCCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTGGCGCAGGCCATCGTCAACGGCGAGGTTCCCGAGACCCTCAAG GACAAGCAGCTCTACACCCTCGACCTCGGTTCGCTGGTCGCGGGCAGCCGCTACCGCGGTGATTTCGAGGAGCGCCTGAA GAAGGTGCTCAAGGAGATCAACACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCACACGCTGGTCGGTGCCGGTG CCGCCGAGGGCGCGATCGACGCCGCCTCCATCCTCAAGCCGAAGCTGGCCCGCGGCGAGCTGCAGACCATCGGCGCCACC ACCCTCGACGAGTACCGCAAGTACATCGAGAAGGACGCCGCCCTGGAGCGCCGCTTCCAGCCGGTGCAGGTGGGCGAGCC GACCGTCGAGCACACCATCAACATCCTCAAGGGCCTGCGCGACCGCTACGAGGCGCACCACCGGGTGTCCATCACCGACG GCGCGCTGGTCGCCGCCGCCACCCTGGCCGACCGGTACATCAACGACCGGTTCCTGCCGGACAAGGCGATCGACCTGATC GACGAGGCGGGCGCGCGCATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTGCGCGAGTTCGACGACAAGATCGCCGA CGCGCGCCGGGAGAAGGAGTCCGCGATCGACGCGCAGGACTTCGAGAAGGCCGCGCGCCTGCGCGACAAGGAGAAGCAGC TCGTCGCCAAGCGCGCCGAGCGGGAGAAGCAGTGGCGCTCCGGTGACCTGGACGTCGTGGCCGAGGTCGACGACGAGCAG ATCGCCGAGGTGCTGGCCAACTGGACCGGTATCCCGGTGTTCAAGCTCACCGAGGAGGAGACCACCCGTCTGCTCCGCAT GGAGGACGAGCTGCACAAGCGGATCATCGGCCAGGAGGATGCGGTCAAGGCCGTCTCCAAGGCCATCCGCCGCACCCGCG CCGGCCTGAAGGATCCGAAGCGTCCGTCCGGCTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACCGAGCTGTCC AAGGCGCTGGCGAACTTCCTGTTCGGCGACGACGACGCGCTCATCCAGATCGACATGGGCGAGTTCCACGACCGCTTCAC CGCCTCGCGGCTGTTCGGTGCCCCTCCGGGCTACGTCGGCTACGAGGAGGGCGGCCAGCTCACCGAGAAGGTGCGCCGCA AGCCGTTCTCGGTCGTGCTGTTCGACGAGATCGAGAAGGCCCACCAGGAGATCTACAACACCCTGTTGCAGGTCCTCGAG GACGGCCGCCTCACCGACGGCCAGGGCCGCACGGTCGACTTCAAGAACACGGTGCTGATCTTCACCTCGAACCTCGGCAC GCAGGACATCTCGAAGGCGGTCGGCCTCGGCTTCTCGCAGTCGAACAACGAGGGCTCGAACTACGAGCGGATGAAGCTCA AGGTCAACGACGAGCTGAAGAAGCACTTCCGGCCCGAGTTCCTCAACCGCATCGACGACGTGATCGTCTTCCACCAGCTC ACCAACGAGCAGATCGTCGAGATGGTGGACCTGATGATCGGCCGCGTCGCCACGCAGCTGAAGAACAAGGACATGGCGAT CGAGCTCACCCCGACCGCCAAGAACCTGCTCGCCAAGCGTGGCTTCGACCCCGTGCTCGGTGCCCGGCCGCTGCGCCGCA CCATCCAGCGCGAGATCGAGGACCAGCTGTCGGAGAAGATCCTCTTCGGCGAGATCGGCCCCGGCCAGACCATCCTGGTC GATGTCGAGGGCTGGGACGGCGAAGGCTCCGGCGAGGACGCCAAGTTCACCTTCACCGGCAAGGCGAAGCTGACCAAGGC CCCCACCGAGGAGAAGCCCGAGGTCGTCCTCACCGGCGCCGCCGAAGGCCCCTCCGAAGCCGCCGCCGGCGAGTAA Protein sequence : MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPF TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEPVESGARGETG TPSTSLVLDQFGRNLTQAALEGKLDPVIGRSKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVNGEVPETLK DKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEINTRGDIILFIDELHTLVGAGAAEGAIDAASILKPKLARGELQTIGAT TLDEYRKYIEKDAALERRFQPVQVGEPTVEHTINILKGLRDRYEAHHRVSITDGALVAAATLADRYINDRFLPDKAIDLI DEAGARMRIRRMTAPPDLREFDDKIADARREKESAIDAQDFEKAARLRDKEKQLVAKRAEREKQWRSGDLDVVAEVDDEQ IAEVLANWTGIPVFKLTEEETTRLLRMEDELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELS KALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHQEIYNTLLQVLE DGRLTDGQGRTVDFKNTVLIFTSNLGTQDISKAVGLGFSQSNNEGSNYERMKLKVNDELKKHFRPEFLNRIDDVIVFHQL TNEQIVEMVDLMIGRVATQLKNKDMAIELTPTAKNLLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFGEIGPGQTILV DVEGWDGEGSGEDAKFTFTGKAKLTKAPTEEKPEVVLTGAAEGPSEAAAGE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 81 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| nfa4150 | YP_116621.1 | Clp protease | VFG0079 | Protein | 0.0 | 61 |
| nfa4150 | YP_116621.1 | Clp protease | VFG0080 | Protein | 8e-146 | 51 |
