Gene Information

Name : nfa25190 (nfa25190)
Accession : YP_118730.1
Strain : Nocardia farcinica IFM 10152
Genome accession: NC_006361
Putative virulence/resistance : Virulence
Product : iron transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2683849 - 2684688 bp
Length : 840 bp
Strand : -
Note : -

DNA sequence : 
ATGACCGTCACCACCACCGGTGCCGCCGCGCACCAGCTCGGCGCCCAGGACATCCGCCTCGGCTACGGCGATCGCGTCAT
CGTCGACGGGCTCAGCCTGGACATCGCGCCGGGCGTGGTCACCACCGTCATCGGCCCGAACGGGTGCGGCAAGTCCACCC
TGCTGCGTTCGCTGGGCAGGCTGCTGCGCCCGAGCGCAGGCCAGGTGCTGCTGGACGGCAAGGCGATCTCGTCGATGAAG
ACCAAGGACGTCGCCCGCATCGTCGGCATGCTGCCGCAGACCCCGGTCGCGCCCGAGGGCCTCACCGTCGCCGACCTGGT
CGCCCGCGGCAGGCATCCGCACCAGTCCTGGCTGCGGCAGTGGTCGGCCGACGACGAGACCGAGGTGCTGGCCGCGCTGG
AACAGACCGGCATCGCCGACCTGGCCGACCGGCCGCTGGACGAGCTGTCCGGCGGCCAGCGCCAGCGCGCCTGGATCTCC
ATGGCGCTGGCCCAGGGCACCGACATCCTGCTGCTGGACGAGCCGACCACCTACCTCGACCTGGCGCATTCGCTCGAGGT
GCTCGACCTGGTCGACCGGTTGCACGACGAACTCGGCCGCACCGTCGTCATGGTGCTGCACGACCTGAATCTGGCCATCC
GCTACAGCGACCGGCTCGTGGTTATGCACGACGGGCGCATCGTGGCGCAGGGCAGTCCGGGCGACATCATCACCGCCGAG
CTGCTGCGCGAGGTGTTCACCCTCGACGCCTCGGTGCTCGAGGACCCGGTCTCCGGACGGCCGATGATCGTGCCGATCGG
CACCCGGCACGTCCGCCCCGGCGCCGCCCGACCCGCCTGA

Protein sequence : 
MTVTTTGAAAHQLGAQDIRLGYGDRVIVDGLSLDIAPGVVTTVIGPNGCGKSTLLRSLGRLLRPSAGQVLLDGKAISSMK
TKDVARIVGMLPQTPVAPEGLTVADLVARGRHPHQSWLRQWSADDETEVLAALEQTGIADLADRPLDELSGGQRQRAWIS
MALAQGTDILLLDEPTTYLDLAHSLEVLDLVDRLHDELGRTVVMVLHDLNLAIRYSDRLVVMHDGRIVAQGSPGDIITAE
LLREVFTLDASVLEDPVSGRPMIVPIGTRHVRPGAARPA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-69 59
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 6e-55 48
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 6e-60 46
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 6e-60 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 1e-58 46
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-58 46
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-58 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-58 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 7e-49 44
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 8e-37 43
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-49 42
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-49 42
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-49 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 2e-49 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
nfa25190 YP_118730.1 iron transporter ATP-binding protein BAC0164 Protein 4e-55 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
nfa25190 YP_118730.1 iron transporter ATP-binding protein VFG0925 Protein 2e-60 50
nfa25190 YP_118730.1 iron transporter ATP-binding protein VFG1042 Protein 4e-55 48