|
Name : nfa24360 (nfa24360) Accession : YP_118647.1 Strain : Nocardia farcinica IFM 10152 Genome accession: NC_006361 Putative virulence/resistance : Virulence Product : ABC transporter membrane protein Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG1108 EC number : - Position : 2601046 - 2601930 bp Length : 885 bp Strand : + Note : - DNA sequence : ATGATGAATCCGATCGAGTTCTTCCTCGAGCCGCTGCGCTACGAGTTCATGGTGCGCGCGCTGACCACCACGGTCGCCGC GGCGCTGGTCTGTGCCGTGCTGTCGTGCTGGCTGGTGCTGATCGGCTGGTCGCTGATGGGGGATGCGGTCTCGCACGCGG TGCTGCCCGGCGTGGTGCTCGCCTATATCGCGGGGCTGCCGTTCGCGGTGGGCGCGGTGGTGTTCGGCTTCGCGGCGGTC GGCCTGATCGGGCTGGTGCGTGAGACCAGCCGGGTCAAGGAGGACGCCGCCATCGGCATCGTGTTCACCACGTTCTTCGC CGCGGGCCTGGTGCTGGTCTCGGTGACGCCGAGCCAGACCGACCTCAATCACATCGTGTTCGGCAACCTGCTCGGGGTCG GCCGCGGCGAACTGGTCCAGGTGGTCGTGCTCGCCGCGATCACCCTGGTGGCGCTGGTGCTGCTGCGCCGCGATTTCACC CTGTTCGCCTTCGACCCCACCCACGCCCACGCCATCGGCCTGAATCCGCGCGTGCTCGGCAGCTGCCTGCTCGGGCTGCT CGCGCTGACGGCCGTGGTGGCACTCCAGGCGGTGGGCGTGGTGCTGGTGGTGGCGATGTTGATCATCCCCGGCGCGACGG CCTATCTGCTCACCGACCGCTTCCAGCGGATGCTGCTCATCGCGCCCGCGGTCTCCGTCGCCGCCGCGGTCACCGGCCTG TATCTGAGCTACCACCTGGACACCGCGTCGGGCGCGATGATCGTGGTGGTGCAGGGCGCGGTGTTCGTGCTGGTCTACCT GTTCGCCCCGCGCCACGGCATCCTCGGGCGCAGGCTGGCCGCGCGCGCCCTGGCCCGCCGTGATCAGGTCACGGCGTCCA GGTGA Protein sequence : MMNPIEFFLEPLRYEFMVRALTTTVAAALVCAVLSCWLVLIGWSLMGDAVSHAVLPGVVLAYIAGLPFAVGAVVFGFAAV GLIGLVRETSRVKEDAAIGIVFTTFFAAGLVLVSVTPSQTDLNHIVFGNLLGVGRGELVQVVVLAAITLVALVLLRRDFT LFAFDPTHAHAIGLNPRVLGSCLLGLLALTAVVALQAVGVVLVVAMLIIPGATAYLLTDRFQRMLLIAPAVSVAAAVTGL YLSYHLDTASGAMIVVVQGAVFVLVYLFAPRHGILGRRLAARALARRDQVTASR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sitD | YP_217784.1 | iron transporter: fur regulated | Virulence | SPI-1 | Protein | 8e-32 | 48 |
| sitD | NP_457258.1 | Iron transport protein, inner membrane component | Virulence | SPI-1 | Protein | 8e-32 | 48 |
| sitD | NP_806467.1 | iron transporter inner membrane protein | Virulence | SPI-1 | Protein | 8e-32 | 48 |
| sitD | AAD41068.1 | SitD | Virulence | centisome 63 pathogenicity island | Protein | 1e-31 | 47 |
| sitD | NP_461785.1 | permease | Virulence | SPI-1 | Protein | 2e-31 | 47 |
| sitC | YP_217783.1 | iron transporter: fur regulated | Virulence | SPI-1 | Protein | 3e-29 | 44 |
| sitC | AAD41067.1 | SitC | Virulence | centisome 63 pathogenicity island | Protein | 2e-29 | 44 |
| sitC | NP_461784.1 | permease | Virulence | SPI-1 | Protein | 3e-29 | 44 |
| sitC | NP_457257.1 | Iron transport protein, inner membrane component | Virulence | SPI-1 | Protein | 2e-29 | 44 |
| sitC | NP_806466.1 | iron transporter inner membrane protein | Virulence | SPI-1 | Protein | 2e-29 | 44 |
| EF0576 | NP_814341.1 | cation ABC transporter permease | Not tested | Not named | Protein | 3e-24 | 42 |
| ef0094 | AAM75297.1 | EF0094 | Not tested | Not named | Protein | 2e-24 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| nfa24360 | YP_118647.1 | ABC transporter membrane protein | BAC0442 | Protein | 6e-31 | 50 |
| nfa24360 | YP_118647.1 | ABC transporter membrane protein | BAC0352 | Protein | 8e-32 | 47 |
| nfa24360 | YP_118647.1 | ABC transporter membrane protein | BAC0441 | Protein | 7e-33 | 46 |
| nfa24360 | YP_118647.1 | ABC transporter membrane protein | BAC0351 | Protein | 1e-29 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| nfa24360 | YP_118647.1 | ABC transporter membrane protein | VFG0528 | Protein | 8e-32 | 47 |
| nfa24360 | YP_118647.1 | ABC transporter membrane protein | VFG0527 | Protein | 1e-29 | 44 |
