Gene Information

Name : nfa24350 (nfa24350)
Accession : YP_118646.1
Strain : Nocardia farcinica IFM 10152
Genome accession: NC_006361
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 2600283 - 2601020 bp
Length : 738 bp
Strand : +
Note : -

DNA sequence : 
GTGATGGGGGAACTCGCGGTGGACGTCGCCGACGTCACGGTCCGCTACGGCGAGGTGCTCGCCCTCGACGGTGTCTCGCT
GACGCTGGCCCCCGGCCGGATCTGCGGCCTGGTCGGCATGAACGGCTCGGGCAAGTCGACACTGTTCAAGACCATTGTGG
GACTGGTCAAGCCGACCTCGGGCACGGTCACCCTCTACGGGGACACCCCGCGCGCGGCGCGCCGCGCCGGCCTGCTCGGC
TATGTGCCGCAGAGCGAGGACGTGGACTGGAGCTTCCCGCTCACGGTCCGCGACGTGGTGCTCACCGGCCGCCACGGCCG
GATGGGCTTCCCGCGCCGTCCGCGCCGCGCCGACCGGGAGGCCGTGGACCGCGCGCTCGCGCGGGTCGAGCTGACCGAGC
TGGCCGACCGGCAGATCGGCAGGCTCTCCGGCGGCCAGCGCAAGCGCGCGTTCGTGGCACGGGCGCTGGCCCAGGAGGCG
ACCCTGCTGCTGCTGGACGAGCCGTTCGCCGGGGTGGACAAGCGCTCGGAAGCGGCGATCACCACGCTGCTGCGCGAGCT
GGCCGGCGAGGGCGCGGCGATCGTGGTGTCCACCCACGACCTGCACGCCCTGCCCGAACTGGCCGACGAGGCCGTGCTGC
TGATGCGCAGCGTGCTGGCGCGCGGCACGCCGGAGGAGGTGCTGCGACCGGAGAACCTGGCCGCCGCCTTCGGCCTGGAC
GTGCTCGGCCGGTCCTGA

Protein sequence : 
MMGELAVDVADVTVRYGEVLALDGVSLTLAPGRICGLVGMNGSGKSTLFKTIVGLVKPTSGTVTLYGDTPRAARRAGLLG
YVPQSEDVDWSFPLTVRDVVLTGRHGRMGFPRRPRRADREAVDRALARVELTELADRQIGRLSGGQRKRAFVARALAQEA
TLLLLDEPFAGVDKRSEAAITTLLRELAGEGAAIVVSTHDLHALPELADEAVLLMRSVLARGTPEEVLRPENLAAAFGLD
VLGRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 2e-50 49
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 2e-50 49
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 8e-51 49
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-51 49
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 6e-51 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
nfa24350 YP_118646.1 ABC transporter ATP-binding protein BAC0440 Protein 1e-56 53
nfa24350 YP_118646.1 ABC transporter ATP-binding protein BAC0350 Protein 4e-51 49
nfa24350 YP_118646.1 ABC transporter ATP-binding protein BAC0400 Protein 8e-37 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
nfa24350 YP_118646.1 ABC transporter ATP-binding protein VFG0526 Protein 4e-51 49