Gene Information

Name : nfa24340 (nfa24340)
Accession : YP_118645.1
Strain : Nocardia farcinica IFM 10152
Genome accession: NC_006361
Putative virulence/resistance : Virulence
Product : ABC transporter substrate-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 2599348 - 2600286 bp
Length : 939 bp
Strand : +
Note : -

DNA sequence : 
ATGAAGCTCGTTGCGTCTCGTGCGTTCTCCGTGCCGTGGCGGTCGGTGACGGCCGCGCTGGCCGCCTGTCTGATGGTCTC
GGTCGTGGCGGCGTGCGGCGGTGCGCGCGGTGACGACGACCGGCCGACCGTGCTGACCACCTTCACCGTGCTCGCCGACA
TCGCGGGCACGGTGGCGGGCGAGCACCTGCGCGTCGAATCGATCACCAAGGCCGGCGCGGAGATCCACGGGTACGAGCCG
ACCCCGGGGGACATCAGGAAGGCGGCCACCGCCGACCTGATCCTGGACAACGGGCTGAACCTGGAGGCGTGGTTCGAGCA
GTTCGTCGCCGAGGTGGACGTGCCGCACGCCGTCGTCAGCGAGGGCGTCGAACCGATCGACATCGCCGGCGACGCCTACC
GAGGCAAGCCCAACCCGCACGCCTGGATGTCGCCGCTGAACGTGCGGATCTACGTCGACAACATGGTGCGCGCCTTCGCC
GAACTCGACCCCGACCACGCCGCCGACTTCCGCGCCAACGGCGAGCGCTACAAGGCCGAACTGGACGCGGTGCACGCGGA
GCTGACCGGTGCGCTGAGCGCGCTGCCCGAATCGCAGCGGGCGCTGGTGACCTGTGAGGGCGCGTTCTCCTACCTGGCCA
GGGACGCCGGGCTCACCGAGAAGTACATCTGGCCGGTCAACGCCGAGCAGCAGGCCACCCCGCAGCAGATCACCTCCGCG
ATCGATTTCGTCCGCGAGCGCGCCGTGCCCGCGGTGTTCTGCGAATCCACCGTCTCCGACGCGCCCATGCGGCGCGTGGT
GGAGGCGACCGGCGCGGCCTTCGGCGGCGTGCTGTACGTGGACTCGCTGTCCGAACCGGACGGGCCGGTGCCCACCTACC
TGGCACTGATCCGGCACGACGCGCGCACCATCGCCGATGCGCTGACAGGACGGGCGTGA

Protein sequence : 
MKLVASRAFSVPWRSVTAALAACLMVSVVAACGGARGDDDRPTVLTTFTVLADIAGTVAGEHLRVESITKAGAEIHGYEP
TPGDIRKAATADLILDNGLNLEAWFEQFVAEVDVPHAVVSEGVEPIDIAGDAYRGKPNPHAWMSPLNVRIYVDNMVRAFA
ELDPDHAADFRANGERYKAELDAVHAELTGALSALPESQRALVTCEGAFSYLARDAGLTEKYIWPVNAEQQATPQQITSA
IDFVRERAVPAVFCESTVSDAPMRRVVEATGAAFGGVLYVDSLSEPDGPVPTYLALIRHDARTIADALTGRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 5e-70 54
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 6e-70 54
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 6e-70 54
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 6e-70 54
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-70 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
nfa24340 YP_118645.1 ABC transporter substrate-binding protein BAC0349 Protein 3e-70 54
nfa24340 YP_118645.1 ABC transporter substrate-binding protein BAC0439 Protein 1e-66 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
nfa24340 YP_118645.1 ABC transporter substrate-binding protein VFG0525 Protein 3e-70 54