Gene Information

Name : nfa23250 (nfa23250)
Accession : YP_118536.1
Strain : Nocardia farcinica IFM 10152
Genome accession: NC_006361
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 2495639 - 2496379 bp
Length : 741 bp
Strand : -
Note : -

DNA sequence : 
ATGGCGGCGGGACTGCGGATCCACGGCTTGACCGCGGGCTATCGGGGGCGGATCGCCCTGCACGACCTCACCGCCGATCT
GCCCGGCGGCGCCGTCACCGCCGTGCTCGGACCCAACGGTTCGGGCAAATCGACGCTGCTCGCCGCGGTCGCGGGAGTGC
TGCGTCCCGCGGCGGGACGGGTCGAGCGCGGCCCCGGCAGGCGGCTGGCGTTCGTGGTCCAGCACAGCGCCGTGCCCGCC
ACGCTGCCCATCACCGTCGCGGAGACGGTGGCGATGGGCCGCTGGTCGCATCGCGGTCCGTGGCGGCGGCTCACCCGCGC
CGACACCGCGATCGTCGACGCCTGCCTGGACCGGCTGGACCTCACCGAGCTGACCGGGCGCCGCCTCGACACCCTCTCCG
GCGGCCAGCGCCAGCGCACCCTGCTCGCCCAGGCGATGGCCCAGCGGGCCGACATCCTGCTGCTCGACGAACCCACCGTC
GGCCTCGACGCGCACTCGCGCCGGATCATCGCCGACCTGCTCGTCGAACTGGCCGCCGACGGCGCGACGATCGTGCAGGC
GACCCACCATCCCGACGAGGCACTGGCAGCGACCCACTGCCTGCTGCTCGAGGCGGGACACCTGCGCGCCCAGGGTGATC
CCGCGTCGATACTCGGCGGCCCCGCGGCGCAACTCTTTGGTCACGAGGGCGTGTCGTTCGACCGAAACGCCTTGGCGCGG
CAATCGATCGGCTTACGCTGA

Protein sequence : 
MAAGLRIHGLTAGYRGRIALHDLTADLPGGAVTAVLGPNGSGKSTLLAAVAGVLRPAAGRVERGPGRRLAFVVQHSAVPA
TLPITVAETVAMGRWSHRGPWRRLTRADTAIVDACLDRLDLTELTGRRLDTLSGGQRQRTLLAQAMAQRADILLLDEPTV
GLDAHSRRIIADLLVELAADGATIVQATHHPDEALAATHCLLLEAGHLRAQGDPASILGGPAAQLFGHEGVSFDRNALAR
QSIGLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-24 41
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 5e-25 41
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 4e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
nfa23250 YP_118536.1 ABC transporter ATP-binding protein BAC0350 Protein 2e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
nfa23250 YP_118536.1 ABC transporter ATP-binding protein VFG0526 Protein 2e-25 41