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Name : lysS (nfa1030) Accession : YP_116309.1 Strain : Nocardia farcinica IFM 10152 Genome accession: NC_006361 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 94188 - 97373 bp Length : 3186 bp Strand : - Note : catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : GTGGCCTGCCTGCTGTGGAGTCTGTCGCCTGCGCTGCGGTTCCTGACCGGGCCGCCGCGCCGCTTCGTCGACGACTACTA CTTCGACGCCCCCGACACCAACGTGATGTGGGCGCTGATCGTGGGCCTGCTCGCCGGCGCGATCGCCAGCCGCAAGCGGA TCGCCTGGTGGTTGCTGGTCGGCTATCTGACGCTGTTCGCGGTGGCCAACGGGTTGCGCTTCGCCGCCGAGCAGAACATC AACGCCCTGGTGGCGATGATCGTGCAGGTCGGCGTGGTCGGCCTGTTGATCGCGGCGTGGCCGGAGTTCTACACCCGGGT GCGGCGCGGGGCCGGCTGGAAGGCGCTGGGCGTGCTGGTCGGTGGGCTGGCGATCGGCTGCCTGCTGGGCTGGGGCCTGG TGGAGGTGTTCCCCGGCTCGCTGCCGCCGGGCTGGCAGCGGCCCGGCTGGGCGGTGTACCGCGTGACCGCGGCGATCCTG GTGGAGAACGAGCATTTCGGCGGGCACCCGCGCCCGTTCGTCAATGTGCTGCTCGGCCTGTTCGGCGCGATCGCGTTGCT GGCGGCGGTGCTCACGCTGCTGCGCTCCCAGCGCGCCGCCAACGCGATGACCGGCCTGGACGAGTCCGCGATCCGCGGCC TGCTGGAGCATTCGGACGTGGAGGACTCGCTGGGCTACTTCGCGACCCGGCGCGACAAGGCGGTGGTGTTCGCGCCCAGC GGCAAGGCGGCGGTGACCTACCGCGTCGAACTCGGCGTCTGCCTGGCCAGCGGCGACCCCGTCGGCGTGCGCGAGGCCTG GCCGCACGCGATCGACGCCTGGCTCCGGCTGGCCGACCGGTTCGGTTGGACACCGGCGGTGATGGGCGCGAGCGAGGAGG GCGCGACCGCCTATCGCCGCGCGGGCCTGTCGGCGCTGCGCCTCGGCGACGAAGCCGTGCTCGACACCCGCGATTTCTCG CTGGCCGGTCCCGAGCTGCGGCAGGTGCGGCAGGCCGCCAACCGGTTGCGCAAACAGGGTGTGCGGGTGCGCATCCGCCG CCACCGCGAGATTCCGTCGGCGGAGTTCGAGCAGATCATGGCCCGCGCCGACGCCTGGCGCGACACCGAGACCGAGCGCG GCTTCTCCATGGCGCTCGGCCGCCTCGGCGACCCGCTGGACGCGGACTGCCTGCTGGTGGAGGCCGTGGCCGCCGACGAC CGCGTGCTGGGCATGCTCTCGCTGGTGCCGTGGGGCCGCACGGGGGTGTCGCTGGAGTTGATGCGCCGCGATCCGCAGGG GCCCAACGGTGTGATGGAGCTGATGATCTCGCAGCTGGCGCTGAACTCCGAGCAGTTCGGCATCACCCGGGTCTCGTTGA ACTTCGCGGTCTTCCGCTCGGTGTTCGAGGAGGGCGGGCGGATCGGCGCGGGCCCGGTACTGCGGTTGTGGCGCGGCGTG CTGTTGTTCTTCTCCCGCTGGTGGCAGCTCGAGGCGCTGTACCGGTCCAATGTGAAGTACCAACCCGACTGGGTGCCGCG GTTCTTCCTGTTCGAGGAACGCAGGCAGCTGCCGCGGGTGGCGGTGGCCAGCGCCCTCGCCGAAGGCTTCCTGCCGCGTC TGGGCAAGGATCCCGACGCGAGCGCGCACACCGGCGCGCAGAGCGCGGTGCCCGACACGCTCACCGGCCTGCACGCCGAC GGCAGCCCACCGGACTGGCCGAAACCCGACCTCCTCGACAGCGGCCCGCGCAGGCCCGAGCAGGTCCGGGTGCGCATGGC GAAGCTGGACCGGATGACGGCGGCGGGTGTGGACGCCTACCCGGTGGCCTACCCGCCGACCCACACCGTCGCCGCGGCCC GGCGGTCGCCACGCGGGACCACCGTGCGGGTGTGCGGGCGGCTGCTGCGCATCCGCGACTACGGCGGCGTGGTGTTCGCG CTGCTGCGCGACTGGTCCGACGACATCCAGCTGGTGATCGACCGCGAGCGGGTGGGGGCGGCGCGCAGCGCGGAGTTCGG CGAGTACTTCGACCTGGGCGATCTCATCGAGGTCAGCGGGCAGATCGGGCGCAGCCGCAGCGGCGAGCTCTCGCTGCTGG CCGCGGACTGGCGGATGCTGGGCAAGTGCCTGCACCCGCTGCCGGACAAGTGGAAGGGCCTGGCCGACCCGGAGGCGCGG GTGCGCCAGCGCTACGTCGACATGGCGATCAACCCGGAGACCCGGGACGTGCTCGCCAAGCGCAGCGCGGTGGTCCGCTC GCTGCGCGAGTCGCTGAACTCCTGGGGCTATCTCGAGGTGGAGACACCCATCCTGCAGCAGGTGCACGGCGGCGCCAACG CCACCCCGTTCACCACCCACATCAACGCCTACGACCTGGATCTCTACCTGCGTATCGCGCCCGAGCTGTACCTCAAGCGG CTGTGCGTGGGTGGCATGGAGAAGGTGTTCGAACTGGGCCGCACCTTCCGCAACGAGGGCGTGGACTTCAGCCACAACCC CGAGTTCACCATCCTCGAGGCCTACGAGGCGCACAGCGACTACATTCGGATGATGCACACCTGCCGGGTGCTCATCCAGA ACGCCGCGCTCGCGGCGAACGGCTCGATGGTCGCGATGCGGCCGGGCGCGGACGGCGCGCTGGAGCCGGTGGACATCTCC GGCGACTGGCCGGTCAAGACGGTGCACGGCGCGGTGTCGGCGGCCGTGGGCACCGAGATCACCCCGCGGACCGGCGTCGC GGAACTGCGCGAACTCTGCGACCGGGTCGGCGTGCCGTATCAGCACGGCTGGGACGAGGGCCAGATCGTGTTGGAGATGT ACGAGCACCTGGTGGAGGCACGCACCGAGGAACCGACCTTCTACGTCGACTTCCCGACCTCGGTCTCGCCGCTGACGCGG GCGCACCGCAGCACCCCCGGCGTCACCGAACGCTGGGATCTGGTGGCCTGGGGCGTCGAACTGGGCACCGCCTACAGCGA ACTCACCGACCCGGTCGAGCAGCGGCGCAGGCTCACCGAACAGTCGGTGCTCGCCGCCAACGGCGACCCGGAGGCGATGG AGCTGGACGAGGACTTCCTGCAGGCGCTCGAGCACGCCATGCCACCCACCGGCGGCCTCGGCATGGGGGTGGACCGCATC GTCATGCTCATCACCGGCCGCAGCATCCGCGAGACACTGCCGTTCCCGCTCGTCAAGCCCCGCTGA Protein sequence : MACLLWSLSPALRFLTGPPRRFVDDYYFDAPDTNVMWALIVGLLAGAIASRKRIAWWLLVGYLTLFAVANGLRFAAEQNI NALVAMIVQVGVVGLLIAAWPEFYTRVRRGAGWKALGVLVGGLAIGCLLGWGLVEVFPGSLPPGWQRPGWAVYRVTAAIL VENEHFGGHPRPFVNVLLGLFGAIALLAAVLTLLRSQRAANAMTGLDESAIRGLLEHSDVEDSLGYFATRRDKAVVFAPS GKAAVTYRVELGVCLASGDPVGVREAWPHAIDAWLRLADRFGWTPAVMGASEEGATAYRRAGLSALRLGDEAVLDTRDFS LAGPELRQVRQAANRLRKQGVRVRIRRHREIPSAEFEQIMARADAWRDTETERGFSMALGRLGDPLDADCLLVEAVAADD RVLGMLSLVPWGRTGVSLELMRRDPQGPNGVMELMISQLALNSEQFGITRVSLNFAVFRSVFEEGGRIGAGPVLRLWRGV LLFFSRWWQLEALYRSNVKYQPDWVPRFFLFEERRQLPRVAVASALAEGFLPRLGKDPDASAHTGAQSAVPDTLTGLHAD GSPPDWPKPDLLDSGPRRPEQVRVRMAKLDRMTAAGVDAYPVAYPPTHTVAAARRSPRGTTVRVCGRLLRIRDYGGVVFA LLRDWSDDIQLVIDRERVGAARSAEFGEYFDLGDLIEVSGQIGRSRSGELSLLAADWRMLGKCLHPLPDKWKGLADPEAR VRQRYVDMAINPETRDVLAKRSAVVRSLRESLNSWGYLEVETPILQQVHGGANATPFTTHINAYDLDLYLRIAPELYLKR LCVGGMEKVFELGRTFRNEGVDFSHNPEFTILEAYEAHSDYIRMMHTCRVLIQNAALAANGSMVAMRPGADGALEPVDIS GDWPVKTVHGAVSAAVGTEITPRTGVAELRELCDRVGVPYQHGWDEGQIVLEMYEHLVEARTEEPTFYVDFPTSVSPLTR AHRSTPGVTERWDLVAWGVELGTAYSELTDPVEQRRRLTEQSVLAANGDPEAMELDEDFLQALEHAMPPTGGLGMGVDRI VMLITGRSIRETLPFPLVKPR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 1e-159 | 45 |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 1e-159 | 45 |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 1e-159 | 45 |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 6e-160 | 45 |
