Gene Information

Name : BPSS0643 (BPSS0643)
Accession : YP_110662.1
Strain :
Genome accession: NC_006351
Putative virulence/resistance : Virulence
Product : response regulator protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 876575 - 877237 bp
Length : 663 bp
Strand : -
Note : Similar to Salmonella typhimurium transcriptional regulatory protein BasR or PmrA or ParA SWALL:BASR_SALTY (SWALL:P36556) (222 aa) fasta scores: E(): 1.2e-38, 50.46% id in 214 aa, and to Ralstonia solanacearum probable response regulator transcription reg

DNA sequence : 
ATGCGCGTATTGCTTGTCGAAGACGATCCGCTCATCGGCAGCGGGCTCGAACAGGGGCTGAAACAGGAAGGCTTCGCGGT
GGACTGGGCGCAGAACGCCGACGCGGCGACGCTCGCGCTGCGCACGACGTCGTACGGCCTGCTGCTGCTCGACCTCGGCC
TGCCGGACAAGGACGGCCTCGCGGTGCTCGCCGCGCTGCGCCGCCGCGACGACGCGCTGCCCGTGATCGTCGTCACCGCG
CGCGACGCGCTGCCCGACCGGATCGCGGGCCTCGATTGCGGCGCGGACGATTACCTCGTCAAGCCGTTCGCGCTCGAGGA
ACTGCTCGCGCGCATCCGCGCGGTGAACCGCCGCCAGGCCGGCCGCGCGCAGACGGTGCTCGCGGTCGGCGCGCTGCGGC
TCGATCCGGCGCGCCATCAGGTGTGGCGCGGCGACGAGGAAGTCGCGCTGTCGCCGAAGGAATTCGTGCTGCTGCACGAG
CTGATGCGCGAGCCGGGCGCGGTGATCTCGCGCGAGCAGTTCGAGGAGCGGCTGTACAGCTGGGGCGAGGAAATCGAGAG
CAACGCGGTGCAGGTGCATATCCACAACCTGCGCAAGAAGCTCGGCCACGACACGATCCTCACGGTGCGCGGCGTCGGCT
ACCGGATCGGAGACGGCGCATGA

Protein sequence : 
MRVLLVEDDPLIGSGLEQGLKQEGFAVDWAQNADAATLALRTTSYGLLLLDLGLPDKDGLAVLAALRRRDDALPVIVVTA
RDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQAGRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHE
LMREPGAVISREQFEERLYSWGEEIESNAVQVHIHNLRKKLGHDTILTVRGVGYRIGDGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 5e-34 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BPSS0643 YP_110662.1 response regulator protein Y16952.3.orf35.gene. Protein 3e-26 41
BPSS0643 YP_110662.1 response regulator protein BAC0083 Protein 8e-26 41
BPSS0643 YP_110662.1 response regulator protein U82965.2.orf14.gene. Protein 1e-29 41
BPSS0643 YP_110662.1 response regulator protein BAC0197 Protein 2e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BPSS0643 YP_110662.1 response regulator protein VFG0473 Protein 1e-39 51
BPSS0643 YP_110662.1 response regulator protein VFG1390 Protein 9e-23 41