Gene Information

Name : BPSS1616 (BPSS1616)
Accession : YP_111624.1
Strain :
Genome accession: NC_006351
Putative virulence/resistance : Virulence
Product : type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 2191452 - 2191715 bp
Length : 264 bp
Strand : -
Note : Similar to Burkholderia pseudomallei SctS SWALL:Q9ZGR0 (EMBL:AF074878) (87 aa) fasta scores: E(): 5.3e-16, 58.14% id in 86 aa, and to Xanthomonas oryzae pv. oryzicola HrcS SWALL:Q93MH8 (EMBL:AF404819) (86 aa) fasta scores: E(): 2.2e-15, 53.48% id in 86 aa

DNA sequence : 
ATGGAAATCGACGACCTGATCCGGCTCACGTCGCAAGGCATGATGCTGTGTCTCTACATCTCGCTGCCGGTCGTGCTCGT
CGCGGCCGCCTCCGGCCTGGCGATCTCGTTCCTGCAGGCGATCACGTCGCTGCAGGAGCAGAGCATCTCGTACGGCGTGA
AGCTCGTCGCGGTGACGGTGACCGTCGCGATCGCCGGGCCGTGGGCGGCCGCCGAGATCCTGCATTTCGCGCAGCAACTG
ATGTCCGCGGCGGTGCCGTCGTGA

Protein sequence : 
MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTVTVAIAGPWAAAEILHFAQQL
MSAAVPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS AAD21322.1 HrcS Virulence Hrp PAI Protein 1e-16 54
hrcS BAB07863.1 HrcS Virulence Hrp PAI Protein 9e-17 54
hrcS AAP34350.1 HrcS Virulence Hrp PAI Protein 9e-17 54
hrcS YP_362152.1 HrcS protein Virulence Hrp PAI Protein 1e-16 54
hrcS YP_198719.1 hypothetical protein Virulence Hrp PAI Protein 1e-16 54
hrcS NP_640756.1 HrcS protein Virulence Hrp PAI Protein 1e-16 54
XC_3017 YP_244085.1 HrcS protein Virulence Hrp PAI Protein 1e-14 53
hrcS NP_636599.1 HrcS protein Virulence Hrp PAI Protein 1e-14 53
lscS AAO18039.1 LscS Virulence TTSS locus Protein 4e-09 42
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 3e-11 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BPSS1616 YP_111624.1 type III secretion protein VFG0395 Protein 1e-09 43
BPSS1616 YP_111624.1 type III secretion protein VFG0043 Protein 2e-10 43
BPSS1616 YP_111624.1 type III secretion protein VFG0187 Protein 1e-04 42