Gene Information

Name : sctS (BPSS1405)
Accession : YP_111417.1
Strain :
Genome accession: NC_006351
Putative virulence/resistance : Virulence
Product : type III secretion-associated protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 1919463 - 1919726 bp
Length : 264 bp
Strand : +
Note : Highly similar to the previously sequenced Burkholderia pseudomallei type III secretion-associated protein SctS SWALL:Q9ZGR0 (EMBL:AF074878) (87 aa) fasta scores: E(): 3.7e-31, 98.85% id in 87 aa. Similar to Ralstonia solanacearum HrpU protein or HrcS or

DNA sequence : 
ATGGAAATCGACTCGCTGATCCGTTTCTGCACGCAGGCCATGCTGCTCTGCCTGACCGTCTCGCTGCCGCCCGTGATCGT
GGCGGCCCTGGTCGGGCTTGGCGTATCGTTCGTGCAGGCGATCACGTCGCTGCAGGATCAGACCTTGCCGCAAGTGCTCA
AGCTGATCGCGGTCACGATCACGATCATGGTTGCCGCGCCGACCGGCTGTGCGGCGATCCTGCATTTCGCGAATCAGATG
ATGCAGCTTGCCGTCCCGCAATGA

Protein sequence : 
MEIDSLIRFCTQAMLLCLTVSLPPVIVAALVGLGVSFVQAITSLQDQTLPQVLKLIAVTITIMVAAPTGCAAILHFANQM
MQLAVPQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS AAD21322.1 HrcS Virulence Hrp PAI Protein 2e-14 53
hrcS BAB07863.1 HrcS Virulence Hrp PAI Protein 2e-14 53
hrcS YP_362152.1 HrcS protein Virulence Hrp PAI Protein 3e-14 53
hrcS YP_198719.1 hypothetical protein Virulence Hrp PAI Protein 3e-14 53
hrcS AAP34350.1 HrcS Virulence Hrp PAI Protein 3e-14 52
hrcS NP_640756.1 HrcS protein Virulence Hrp PAI Protein 4e-14 52
XC_3017 YP_244085.1 HrcS protein Virulence Hrp PAI Protein 1e-11 50
hrcS NP_636599.1 HrcS protein Virulence Hrp PAI Protein 1e-11 50
lscS AAO18039.1 LscS Virulence TTSS locus Protein 4e-08 46
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 9e-07 44
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 9e-07 44
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 5e-07 44
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 8e-07 44
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 8e-07 44
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 2e-06 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sctS YP_111417.1 type III secretion-associated protein VFG0043 Protein 5e-09 47
sctS YP_111417.1 type III secretion-associated protein VFG0395 Protein 3e-09 46
sctS YP_111417.1 type III secretion-associated protein VFG0520 Protein 2e-07 44