|
Name : sctV (BPSS1401) Accession : YP_111413.1 Strain : Genome accession: NC_006351 Putative virulence/resistance : Virulence Product : type III secretion-associated protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 1914705 - 1916822 bp Length : 2118 bp Strand : + Note : Almost identical to the previously sequenced Burkholderia pseudomallei type III secretion-associated protein SctV SWALL:Q93KZ1 (EMBL:AF074878) (705 aa) fasta scores: E(): 0, 99.71% id in 705 aa. Similar to Pseudomonas glumae HrpO SWALL:Q9F1J5 (EMBL:AB0534 DNA sequence : ATGTTCAAATCGCTGAAACTGCCCGCGGGCGGTGAAATCGGAATCGTCGCCCTGGTCATCGCGATCATCTCGCTGATGAT ACTGCCGCTGCCGCCAGTCGCGATCGACCTGCTGCTGGGCATCAACATCACCATCAGCGTGACGCTGCTGATGGTGACGA TGTACGTTCCGGATATCGCCGCGCTATCCGCGTTTCCGTCGCTCCTGCTGTTCACGACGCTGTTCCGGCTGTCGCTCAAC ATCGCGTCCACCAAGTCGATCCTGCTGCATGCGGAAGCGGGCAACATTATCGAGAGCTTTGGCCAGCTGGTGGTGGGCGG CAACCTCGTCGTGGGCCTGGTCGTATTCGCCATCATCACGACCGTGCAATTCATCGTGATCGCGAAAGGCTCCGAGCGTG TTGCGGAAGTCGGCGCCCGCTTCACGCTGGATGCGCTTCCGGGCAAGCAGATGAGCATCGACGCCGATTTGCGCTCCGGC CTGCTGAGCACCGAGGAGGCACGGAAGAAGCGCGCGACGCTGGCGGTCGAAAGCCAGTTGCACGGCGGGATGGATGGCGC GATGAAATTCGTCAAGGGCGACGCGATCGCCGGTCTCATCATCACGATGATCAACATCGTCGCGGGCATTGCGGTCGGCG TTGCATATCACGGAATGTCGGCGGGCGACGCGGCAAACCGCTTCTCCGTATTGTCCGTCGGCGACGCGATGGTGTCGCAG ATTCCGTCCCTGTTGCTCTCCGTCGCGGCAGGCGTGATGATCACGCGCGTCACCGACGAGCGCGCGCCGAAGCGGCGCTC GCTCGGCGATGAAATCAGCCACCAGCTCGGCTCGAGCGCGCGTGCATTGTATTTCGCAGCGTTTCTTCTGCTCGGCTTCG CCGCCGTGCCGGGCTTCCCCGCGGCGCTGTTCGTGCTGCTTGCCGCCGCGCTCGCGTTCGCCGGCTATCGACTGTCACGA AAGGGTTCGCCATCGTCCGGCGCCGCTCGCGGACAAGAGCAGGAGGCGCTGCGTGCGATGCAGCGTTCGGGCGCCAAGGC GGACGTCCCTCCGATCCTGCCGCGCGCGCCTCAGTTCGCTTGCGCCGTCGGCGTTCGGATCGCGCCGGATCTCGCGTCCG GTCTTGCGTTGCCGAGGCTCGACGAAGCGCTCGACCTCGAGCGTGCACGCCTGCAGGACGAACTCGGGCTTCCTTTTCCC GGCGTGACGATGTGGATTCATCCGACGCTCTCGGCAGCAACCTTCGAAGTGCTGATCCACGACGTGCCGCATCTTTCCGT CACGCTTCCGGCTCGCAAGGCGATGCTGCCGCAGCAAAGGCATCTGTCGCCCGCTCACGCCGCGCTGACGGACGAGCAAA AGGCGCGGCACCGGGATTTGATCGAACGGAGCGAAGCCGGCCCGCCGATCGACGCAAGCGGCCAAGCGACCCACTGGATC GACGAGCCGGCGGTCACCGCGAAGGACAGCGTATGGCGCGCAGAACAGATCATCGCGTACGCATCCGTGGCGGCGATCCG CACTCACGCACCGCTTTTTGTCGGCATCCAGGAAGTGCAGTGGATACTCGATCAGTTGGGCGCCGACTCCCCGGGCCTCG TCGCCGAAGTGCTGAAGATCTTGCCGTCGACGCGCATTGCCGATGTGCTACGCCGCCTGCTTGAAGAGCAGATATCGATC CGCAACGTGCGAACGATCATGGAAAGTCTGGTCGCATGGGGCGCGAAGGAGAAAGACATGCTGATGTTGACCGAATACGT GCGCGGCGACCTGTCGCGCTTTCTCGCCCATCGAGCCGCGCAAGGCGAACGCGTGTTGTCCGCGGTCCTGTTCGACCTGC AGGCGGAACAGCACATCCGCCAGGCGATCAAGCAAACGCCGACAGGCAATTTCCTCGCACTGCCCCCGGACGACGCATCG CGGCTTGTCGATCGCATTCAGTCGCTCGTCGGCGCGAACGCCCGCACGGACATCGCGCTCGTCACCTCGATGGACATTCG CCGCTATGTACGACGAATGATCGAGCGACGCATCGACTGGCTAGCCGTGTACTCGTATCAAGAGCTCGGCGAACACGTCG AGCTGCGTCCGGTCGGCCGCGTGTCGCTCCAGGGTTGA Protein sequence : MFKSLKLPAGGEIGIVALVIAIISLMILPLPPVAIDLLLGINITISVTLLMVTMYVPDIAALSAFPSLLLFTTLFRLSLN IASTKSILLHAEAGNIIESFGQLVVGGNLVVGLVVFAIITTVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRSG LLSTEEARKKRATLAVESQLHGGMDGAMKFVKGDAIAGLIITMINIVAGIAVGVAYHGMSAGDAANRFSVLSVGDAMVSQ IPSLLLSVAAGVMITRVTDERAPKRRSLGDEISHQLGSSARALYFAAFLLLGFAAVPGFPAALFVLLAAALAFAGYRLSR KGSPSSGAARGQEQEALRAMQRSGAKADVPPILPRAPQFACAVGVRIAPDLASGLALPRLDEALDLERARLQDELGLPFP GVTMWIHPTLSAATFEVLIHDVPHLSVTLPARKAMLPQQRHLSPAHAALTDEQKARHRDLIERSEAGPPIDASGQATHWI DEPAVTAKDSVWRAEQIIAYASVAAIRTHAPLFVGIQEVQWILDQLGADSPGLVAEVLKILPSTRIADVLRRLLEEQISI RNVRTIMESLVAWGAKEKDMLMLTEYVRGDLSRFLAHRAAQGERVLSAVLFDLQAEQHIRQAIKQTPTGNFLALPPDDAS RLVDRIQSLVGANARTDIALVTSMDIRRYVRRMIERRIDWLAVYSYQELGEHVELRPVGRVSLQG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 7e-134 | 57 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 7e-134 | 57 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 3e-135 | 57 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 1e-135 | 57 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 1e-135 | 57 |
| hrcV | BAB07859.1 | HrcV | Virulence | Hrp PAI | Protein | 1e-131 | 57 |
| hrcV | YP_198723.1 | protein HrcV | Virulence | Hrp PAI | Protein | 2e-131 | 57 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-106 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sctV | YP_111413.1 | type III secretion-associated protein | VFG0064 | Protein | 2e-104 | 42 |
