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Name : sctU (BPSS1400) Accession : YP_111412.1 Strain : Genome accession: NC_006351 Putative virulence/resistance : Virulence Product : type III secretion system protein HrcU Function : - COG functional category : N : Cell motility COG ID : COG1377 EC number : - Position : 1913631 - 1914689 bp Length : 1059 bp Strand : + Note : Almost identical to the previously sequenced Burkholderia pseudomallei type III secretion-associated protein SctU SWALL:Q93KZ2 (EMBL:AF074878) (351 aa) fasta scores: E(): 5.4e-132, 99.14% id in 352 aa. Similar to Ralstonia solanacearum hypersensitivity re DNA sequence : ATGAGCGACGAAAAGACCGAGGAACCCACCGACAAGAAGCTGCGTGACGCGCGTCGAGACGGTGAGGTATCCCGTAGCAC GGATCTCTCCGACGCCGTATCCATGTCCGCTGCGATTCTGTTGCTGGTTGCGGCCGCCGATCATTTCGGCGATGCAATGC GAGCGTTGGTCAACGGCGCGCTAGCGTTCGTCTCCGCCGATCATTCGCTCGTCGAGATGACCGCGCGGCTGTACCAGTTC GGCGGCATTGCGCTATCGGCGGTCATGCCGCTGCTGTTCGTCGCGGCGCTCGCGGGTATCGGCGGATCGGTCCTCCAGGT CGGGCTGCAGATATCGCTGAAACCGGTCATGCCGAATCTCGGCGCACTCAATCCGGCTGAAGGTCTGAAGAAGCTTTTTT CGCCGCGTAGCGCGATCGAGTCCATCAAGATGATCGTCAAGGCCGTCATCGTGTTCTGCGTGGCGTGGAAAACGATCGTA TGGCTGTTCCCGCTCATCGCCGGCGCGCTGTATCAATCGCCGCCCGAACTGTCACGCATATTCCGGGAGATTCTGGCGAA GTGGCTGATGGTGGTGGCCGGTCTATGCCTTCTGATGGGGGCGGCCGACGTGAAGCTCCAGCGCTTCATGTTCATGCAAA AGATGAAGATGACGAAGGACGAGGTGAAGCGCGAATCCAAAAACGACGAAGGCGATCCGCTGCTCAAGGGCGAGCGCAAG CGGCTTGCGCGCGAACTGGCGGCCGCACCGCCGCAGCATCAGGTCGCGCACGCGAATTTCGTCGTCGTCAACCCCACCCA CTACGCGGTCGCGATTCGTTACGCGCCCGACGAGCATCCGCTCCCCCGCGTGGTCGCGAAGGGCCTCGACGAAGCGGCCA TCGCACTGCGGCGAGCCGCGCAAGACGCGAACATCCCGATCATCGGCAATCCCCCTGTCGCGCGCGCGTTGTTCCGAATC GGCGTCGAGGAGCCGGTGCCCGAAGAACTGTTCGAGATCGTTGCAGCGATCCTGCGCTGGATCGACGCGATCGGCCCGCG CCGAAACGAACGGGCCTGA Protein sequence : MSDEKTEEPTDKKLRDARRDGEVSRSTDLSDAVSMSAAILLLVAAADHFGDAMRALVNGALAFVSADHSLVEMTARLYQF GGIALSAVMPLLFVAALAGIGGSVLQVGLQISLKPVMPNLGALNPAEGLKKLFSPRSAIESIKMIVKAVIVFCVAWKTIV WLFPLIAGALYQSPPELSRIFREILAKWLMVVAGLCLLMGAADVKLQRFMFMQKMKMTKDEVKRESKNDEGDPLLKGERK RLARELAAAPPQHQVAHANFVVVNPTHYAVAIRYAPDEHPLPRVVAKGLDEAAIALRRAAQDANIPIIGNPPVARALFRI GVEEPVPEELFEIVAAILRWIDAIGPRRNERA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcU | NP_640761.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 1e-60 | 46 |
| hrcU | AAP34345.1 | HrcU | Virulence | Hrp PAI | Protein | 1e-57 | 46 |
| XC_3012 | YP_244080.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 6e-49 | 45 |
| hrcU | NP_636604.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 6e-49 | 45 |
| hrcU | YP_362157.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 2e-57 | 45 |
| hrcU | BAB07858.1 | HrcU | Virulence | Hrp PAI | Protein | 3e-58 | 45 |
| hrcU | YP_198724.1 | type III secretion system protein HrcU | Virulence | Hrp PAI | Protein | 7e-58 | 45 |
