|
Name : sctT (BPSS1392) Accession : YP_111404.1 Strain : Genome accession: NC_006351 Putative virulence/resistance : Virulence Product : type III secretion-associated protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4791 EC number : - Position : 1907166 - 1907984 bp Length : 819 bp Strand : - Note : Similar to Xanthomonas campestris type III secretion associated protein Hrpb8 SWALL:Q56786 (EMBL:U33548) (276 aa) fasta scores: E(): 7.1e-46, 44.64% id in 271 aa. Identical to Burkholderia pseudomallei type III secretion-associated protein SctT SWALL:Q93L DNA sequence : TTGACGCCTGCGCTTTTTGCTTTGCAGGGTTGGGCCGGCGCGCTGCTCGATGATGTCACGCTGCTCGCCATCTGCTCGGT TCGCCTCTATATCGTGATGTCCGTTTTCCCGCCGACGGCTGACGGGCTGTCGCAAGGCGTCGTGCGCAATGCGCTCGTGA TCTTGTTCGGTTCGTACGTCGCGTACGGACAACCGGCGGGGTTCGTGCAGACGCTGCACGGCACGCCGCTGATCGTGACC GGCTTGCGAGAGGCCGTGATCGGCGTCGTCCTCGGTATTGCCGCGTCCACGGTGTTCTGGGCGATCGAAGGCGCAGGTTG TTATATCGACGATCTGACGGGATACAACAACGTGCAGATGACGAATCCCGCGCGTGGGGAGCAGTCGACGCCGACGGCGA CGCTGCTCACGCAGGTCGCGACGGTCGCGTTCTGGACGTTCGGGGGAATGACCTTCCTGCTCGGTACGCTATACGAATCG TATCGATGGTGGCCGATCACGCTGACCTTCCCCCGGATGCCGGCATTGATCGAGGCGTTCGCCGTGAGTCAGACCGACAG CTTGATGCAAATGGTCACGAAGCTCGCCGCGCCGATGATGCTGGTTCTTCTGCTGATCGATTTCGCCTTCGGATTCGCCG CGAAGTCTGCTTCGAAGCTCGATCTCATGGGGTTGAGTCAGCCTGTCAAGGGCGCGGTGACGGTGCTGATGCTCGCATTG TTCGTCGGTACGTTCGTCGATCAAGCGCGCGAGCAGGTGACGCTGTCGACGCTATCGAAACAGCTGCGCGAGTGGTCGCA CGCCATGTCGCGCGGCTGA Protein sequence : MTPALFALQGWAGALLDDVTLLAICSVRLYIVMSVFPPTADGLSQGVVRNALVILFGSYVAYGQPAGFVQTLHGTPLIVT GLREAVIGVVLGIAASTVFWAIEGAGCYIDDLTGYNNVQMTNPARGEQSTPTATLLTQVATVAFWTFGGMTFLLGTLYES YRWWPITLTFPRMPALIEAFAVSQTDSLMQMVTKLAAPMMLVLLLIDFAFGFAAKSASKLDLMGLSQPVKGAVTVLMLAL FVGTFVDQAREQVTLSTLSKQLREWSHAMSRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpB8 | YP_198732.1 | protein HrpB8 | Virulence | Hrp PAI | Protein | 4e-38 | 47 |
| hrpB8 | BAB07850.1 | HrpB8 | Virulence | Hrp PAI | Protein | 3e-38 | 47 |
| hrpB8 | AAF61279.1 | HrpB8 | Virulence | Hrp PAI | Protein | 3e-38 | 47 |
| hrpB8 | AAB08463.1 | HrpB8 | Virulence | Hrp PAI | Protein | 1e-38 | 45 |
| XC_3004 | YP_244072.1 | HrpB8 protein | Virulence | Hrp PAI | Protein | 2e-38 | 45 |
| hrcT | NP_636612.1 | HrpB8 protein | Virulence | Hrp PAI | Protein | 2e-38 | 45 |
| hrcT | YP_362165.1 | HrcT protein | Virulence | Hrp PAI | Protein | 1e-38 | 45 |
| hrcT | NP_640769.1 | HrcT protein | Virulence | Hrp PAI | Protein | 4e-38 | 45 |
| hrcT | AAP34337.1 | HrcT | Virulence | Hrp PAI | Protein | 3e-38 | 45 |
