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Name : BPSL3008 (BPSL3008) Accession : YP_109603.1 Strain : Genome accession: NC_006350 Putative virulence/resistance : Virulence Product : type IV pilus assembly protein Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3584982 - 3586241 bp Length : 1260 bp Strand : + Note : Similar to Aeromonas hydrophila type IV pilus assembly protein TapB SWALL:TAPB_AERHY (SWALL:P45792) (568 aa) fasta scores: E(): 1.3e-64, 51.04% id in 382 aa DNA sequence : ATGTCCGCAACGCCCTCCAACCCTTCTTTCCCCGCCGTGCGGTCCGCAGCATCCGCGCTGCCCCGGCCGCGCGCGCCCGA GCTCGCCGACGACGCACCCGCGGTCGGTATCGTCGCCGACATGCTGCGCGCGGCCCACGAGCGCGATGCTTCCGACATCC ATGTCGAGCCCTGTGAATCCGGCTGGCGCGTGCGTCTGCGCATCGACGGCGTGCTGCACGAGTTCGCGCGGCCGCCCGCT CATTTGCGCGACGCATGCGTGACGCGCATCAAGGTACTCGCGCGGATGGACATCGCCGAGCGCCGCGTGCCGCAGGACGG CCGGCTGCGGCTCCCGCTCGCGCCGGGGCGCGCGGGCGACTACCGCGTGAGCTCGCTGCCGACGCTGCATGGCGAGAAAC TCGTGCTGCGGCGTCTGGAGACGCTGCCCGCCGATCTGTCGCTCGCCGCGCTCGGCTTCGACGCGGCTCAGGCACGCGGC GTCGAGGCGGCGATCGGCGCGCCGCACGGTCTCATCCTCGTCACGGGGCCGACGGGCAGCGGCAAGACGCTGTCACTGTA TTGCTTCCTGCAAATGCTGAACGACGTGTCGCGCAACGTCTGCACGGTCGAGGATCCGGCCGAGATCGAGCTCGACGGCA TCAACCAGGTCGGCGTGCGCGAGAAGGCGGGCCTCACCTTCGCGGTCGCGCTGCGCGCGTTCCTGCGGCAGGATCCCGAC GTCATCATGGTCGGCGAGATACGCGATGCGCAGACCGCCGACGTCGCGCTGAAAGCCGCGCAGACCGGGCACCTCGTGCT GTCGACGCTGCACACGAATGACGCGCCCGCCGCGGTAGCCCGCCTGCTCGACATCGGCGTCGCGCCGTACAACCTCGCCG CCGCGCTGCGGCTCGTGACAGCGCAGCGGCTCGTGCGACGCCTGTGCCCCGCTTGCCGCGCGCCGTCGGACGCGTCGCCC GCCACACTGCGCGCCGCGGGATTCGACGCCGCGTCGATCGACGCCGGCTGGCGCCCGTATGCCGCGAACGGATGCGCCGC ATGCCATGGAATCGGTTATCGGGGGCGCATCGGCATCCATCAGGTGATGCCGCTGTCCGCCGAGTTGCGCAACCTGACCG TCGCGCGCGCGGGCAGCGCCGAACTCGCGCGACAAGCGCGCGCCGAAGGCATGGCGAGCCTGCGCGATGCGGCACTCGCC CGCGTTCGCGACGGCACGACGAGCTTGAGCGAAGCGCTCGCCACGACGGAGGCGGCATGA Protein sequence : MSATPSNPSFPAVRSAASALPRPRAPELADDAPAVGIVADMLRAAHERDASDIHVEPCESGWRVRLRIDGVLHEFARPPA HLRDACVTRIKVLARMDIAERRVPQDGRLRLPLAPGRAGDYRVSSLPTLHGEKLVLRRLETLPADLSLAALGFDAAQARG VEAAIGAPHGLILVTGPTGSGKTLSLYCFLQMLNDVSRNVCTVEDPAEIELDGINQVGVREKAGLTFAVALRAFLRQDPD VIMVGEIRDAQTADVALKAAQTGHLVLSTLHTNDAPAAVARLLDIGVAPYNLAAALRLVTAQRLVRRLCPACRAPSDASP ATLRAAGFDAASIDAGWRPYAANGCAACHGIGYRGRIGIHQVMPLSAELRNLTVARAGSAELARQARAEGMASLRDAALA RVRDGTTSLSEALATTEAA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-73 | 49 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-73 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| BPSL3008 | YP_109603.1 | type IV pilus assembly protein | VFG2426 | Protein | 4e-175 | 100 |
| BPSL3008 | YP_109603.1 | type IV pilus assembly protein | VFG0233 | Protein | 9e-90 | 50 |
| BPSL3008 | YP_109603.1 | type IV pilus assembly protein | VFG2048 | Protein | 8e-74 | 49 |
| BPSL3008 | YP_109603.1 | type IV pilus assembly protein | VFG0182 | Protein | 7e-71 | 48 |
| BPSL3008 | YP_109603.1 | type IV pilus assembly protein | VFG1876 | Protein | 2e-67 | 44 |
