Gene Information

Name : xerD (MS0746)
Accession : YP_087938.1
Strain : Mannheimia succiniciproducens MBEL55E
Genome accession: NC_006300
Putative virulence/resistance : Unknown
Product : site-specific tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 698738 - 699634 bp
Length : 897 bp
Strand : +
Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d

DNA sequence : 
ATGATGAAAGATTCCGCGTTAATTGAGTTATTTTTAAACGAATTATGGCTTGGAAAAGGATTGTCCGATAACACGGTGCA
ATCTTACCGGTTGGATTTAACCGCATTAAGCCAATGGTTGCAAGGGCAGGGCAAGAGCCTTGAAACCCTTGATTCTTCCG
ATCTCCAAGCATTTCTCGGCGAACGGGTGGATCAAGGCTATAAAGCGACCAGCACGGCAAGAATGCTCAGCGCTATGCGC
AAACTTTTTCAATATTTGTATCAGGAAAGCTATCGTACCGATGATCCCAGCGCTATATTAAGTTCGCCCAAGTTACCGGG
TCGTTTGCCTAAATATTTAACCGAGCAACAGGTGGGGGATTTGTTAAATGCGCCAAGTACGGATATTCCGCTGGAATTGC
GCGACAAAGCCATGCTTGAACTATTATATGCCACCGGTTTGCGGGTGACCGAACTTGTCACCTTAAGCACGGATAATATC
AATCTTGAGCAAGGTGTGGTACGCGTGATTGGCAAAGGTAATAAGGAACGCATTGTACCCATGGGCGAGGAGGCTTCTTA
TTGGGTCGGGCAGTTTATTCTATACGGGCGCCCCATGCTGCTAAACGGGCAAAGTTCGGATGTTATTTTTCCAAGCAAAC
GGGCATTGCAAATGACAAGGCAGACTTTCTGGCACCGCATTAAGCATTATGCGATTTTAGCTGATATCGACACCGACAGC
CTCTCGCCGCACGTATTGCGCCATGCCTTCGCCACTCATTTGGTGAATCACGGCGCCGATTTGCGAGTGGTGCAAATGTT
ATTGGGCCACAGCGATTTATCTACCACCCAAATTTATACCCATGTAGCGAAAGAACGGTTGAAACGCCTGCATGAAAAAT
ACCACCCGAGGGGCTAA

Protein sequence : 
MMKDSALIELFLNELWLGKGLSDNTVQSYRLDLTALSQWLQGQGKSLETLDSSDLQAFLGERVDQGYKATSTARMLSAMR
KLFQYLYQESYRTDDPSAILSSPKLPGRLPKYLTEQQVGDLLNAPSTDIPLELRDKAMLELLYATGLRVTELVTLSTDNI
NLEQGVVRVIGKGNKERIVPMGEEASYWVGQFILYGRPMLLNGQSSDVIFPSKRALQMTRQTFWHRIKHYAILADIDTDS
LSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVAKERLKRLHEKYHPRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 6e-56 49
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 6e-56 49